build: migrate setup.{cfg,py} => pyproject.toml

Author: casperdcl

.pre-commit-config.yaml

@@ -36,9 +36,10 @@ repos:
     - flake8-comprehensions
     - flake8-debugger
     - flake8-isort
+    - flake8-pyproject
     - flake8-string-format
 - repo: https://github.com/google/yapf
-  rev: v0.32.0
+  rev: v0.33.0
   hooks:
   - id: yapf
     args: [-i]

LICENCE.md

@@ -1,4 +1,4 @@
-Copyright 2020 AMYPAD
+Copyright 2020-23 AMYPAD
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this project except in compliance with the License.

pyproject.toml

@@ -1,6 +1,94 @@
 [build-system]
 requires = ["setuptools>=42", "wheel", "setuptools_scm[toml]>=3.4"]
+build-backend = "setuptools.build_meta"
 
 [tool.setuptools_scm]
 write_to = "miutil/_dist_ver.py"
 write_to_template = "__version__ = '{version}'\n"
+
+[tool.setuptools.packages.find]
+exclude = ["tests"]
+
+[project.urls]
+documentation = "https://github.com/AMYPAD/miutil/#miutil"
+repository = "https://github.com/AMYPAD/miutil"
+changelog = "https://github.com/AMYPAD/miutil/releases"
+
+[project]
+name = "miutil"
+dynamic = ["version"]
+maintainers = [{name = "Casper da Costa-Luis", email = "[email protected]"}]
+description = "Medical imaging utilities for the AMYPAD and NiftyPET projects"
+readme = "README.rst"
+requires-python = ">=3.7"
+keywords = ["fMRI", "PET", "SPECT", "EEG", "MEG"]
+license = {text = "Apache-2.0"}
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Developers",
+    "Environment :: GPU",
+    "Environment :: GPU :: NVIDIA CUDA",
+    "Intended Audience :: Education",
+    "Intended Audience :: Healthcare Industry",
+    "Intended Audience :: Science/Research",
+    "License :: OSI Approved :: Apache Software License",
+    "Operating System :: Microsoft :: Windows",
+    "Operating System :: POSIX :: Linux",
+    "Programming Language :: Other Scripting Engines",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.7",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3 :: Only",
+    "Topic :: Scientific/Engineering :: Medical Science Apps.",
+    "Topic :: Software Development :: Libraries",
+    "Topic :: Software Development :: Libraries :: Python Modules",
+    "Topic :: Software Development :: User Interfaces",
+    "Topic :: System :: Installation/Setup",
+    "Topic :: Utilities"]
+dependencies = ["tqdm>=4.40.0"]
+
+[project.optional-dependencies]
+dev = ["pytest>=6", "pytest-cov", "pytest-timeout", "pytest-xdist"]
+nii = ["nibabel>=4.0", "numpy"]
+plot = ["matplotlib", "numpy", "scipy"]
+cuda = ["argopt", "pynvml"]
+web = ["requests"]
+mbeautify = ["argopt", "tqdm>=4.42.0", "requests"]  # web
+
+[project.scripts]
+cuinfo = "miutil.cuinfo:main"
+mbeautify = "miutil.mlab.beautify:main"
+
+[tool.flake8]
+max_line_length = 99
+extend_ignore = ["E261"]
+exclude = [".git", "__pycache__", "build", "dist", ".eggs"]
+
+[tool.yapf]
+spaces_before_comment = [15, 20]
+arithmetic_precedence_indication = true
+allow_split_before_dict_value = false
+coalesce_brackets = true
+column_limit = 99
+each_dict_entry_on_separate_line = false
+space_between_ending_comma_and_closing_bracket = false
+split_before_named_assigns = false
+split_before_closing_bracket = false
+blank_line_before_nested_class_or_def = false
+
+[tool.isort]
+profile = "black"
+line_length = 99
+multi_line_output = 4
+known_first_party = ["miutil", "tests"]
+
+[tool.pytest.ini_options]
+minversion = "6.0"
+timeout = 15
+log_level = "INFO"
+python_files = ["tests/test_*.py"]
+testpaths = ["tests"]
+addopts = "-v --tb=short -rxs -W=error --log-level=debug -n=auto --durations=0 --cov=miutil --cov-report=term-missing --cov-report=xml"