Learnrs module 3 ready

Author: phgrosjean

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: BioDataScience1
-Version: 2025.2.0
+Version: 2025.3.0
 Title: A Series of Learnr Documents for Biological Data Science 1
 Description: Interactive documents using learnr and shiny applications for studying biological data science.
 Authors@R: c(

NEWS.md

@@ -1,3 +1,7 @@
+# BioDataScience1 2025.3.0
+
+-   Learnrs **A03La_barplot**, **A03Lb_boxplot** and **A03Lc_comp_fig** revised for 2025-2026.
+
 # BioDataScience1 2025.2.0
 
 -   Learnrs **A02La_progression**, **A02Lb_univariate** and **A02Lc_git** revised for 2025-2026.

inst/tutorials/A03La_barplot/A03La_barplot.Rmd.inactivated renamed to inst/tutorials/A03La_barplot/A03La_barplot.Rmd

@@ -17,9 +17,35 @@ runtime: shiny_prerendered
 ```{r setup, include=FALSE}
 BioDataScience1::learnr_setup()
 SciViews::R()
+# Required for RSConnect
+# SciViews::R
+library(rlang)
+library(data.table)
+library(ggplot2)
+library(tibble)
+library(tidyr)
+library(dplyr)
+library(dtplyr)
+library(broom)
+library(forcats)
+library(collapse)
+library(fs)
+library(data.trame)
+library(svFast)
+library(svTidy)
+library(svMisc)
+library(svBase)
+library(svFlow)
+library(data.io)
+library(chart)
+library(tabularise)
+library(SciViews)
+# ... more
+library(readxl)
+library(testthat)
+library(equatags)
 library(BioDataScience)
-
-# Dataset
+# Datasets
 set.seed(2710)
 e_mathaei <- dtx(
   id      = 1:345,

inst/tutorials/A03Lb_boxplot/A03Lb_boxplot.Rmd.inactivated renamed to inst/tutorials/A03Lb_boxplot/A03Lb_boxplot.Rmd

@@ -17,8 +17,34 @@ runtime: shiny_prerendered
 ```{r setup, include=FALSE}
 BioDataScience1::learnr_setup()
 SciViews::R()
+# Required for RSConnect
+# SciViews::R
+library(rlang)
+library(data.table)
+library(ggplot2)
+library(tibble)
+library(tidyr)
+library(dplyr)
+library(dtplyr)
+library(broom)
+library(forcats)
+library(collapse)
+library(fs)
+library(data.trame)
+library(svFast)
+library(svTidy)
+library(svMisc)
+library(svBase)
+library(svFlow)
+library(data.io)
+library(chart)
+library(tabularise)
+library(SciViews)
+# ... more
+library(readxl)
+library(testthat)
+library(equatags)
 library(BioDataScience)
-
 # Dataset
 crabs <- read("crabs", package = "MASS", lang = "fr")
 ```

inst/tutorials/A03Lc_comp_fig/A03Lc_comp_fig.Rmd.inactivated renamed to inst/tutorials/A03Lc_comp_fig/A03Lc_comp_fig.Rmd

@@ -17,9 +17,36 @@ runtime: shiny_prerendered
 ```{r setup, include=FALSE}
 BioDataScience1::learnr_setup()
 SciViews::R()
+# Required for RSConnect
+# SciViews::R
+library(rlang)
+library(data.table)
+library(ggplot2)
+library(tibble)
+library(tidyr)
+library(dplyr)
+library(dtplyr)
+library(broom)
+library(forcats)
+library(collapse)
+library(fs)
+library(data.trame)
+library(svFast)
+library(svTidy)
+library(svMisc)
+library(svBase)
+library(svFlow)
+library(data.io)
+library(chart)
+library(tabularise)
+library(SciViews)
+# ... more
+library(readxl)
+library(testthat)
+library(equatags)
 library(BioDataScience)
-
-# Dataset
+library(pastecs)
+# Datasets
 e_mathaei <- data_frame(
   id      = 1:345,
   variety = c(rep("black", times = 236L), rep("purple" , times = 40L),