DESCRIPTION

Package: HDF5Array
Title: HDF5 datasets as array-like objects in R
Description: The HDF5Array package is an HDF5 backend for DelayedArray objects.
	It implements the HDF5Array, H5SparseMatrix, H5ADMatrix, and
	TENxMatrix classes, 4 convenient and memory-efficient array-like
	containers for representing and manipulating either: (1) a conventional
	(a.k.a. dense) HDF5 dataset, (2) an HDF5 sparse matrix (stored in
	CSR/CSC/Yale format), (3) the central matrix of an h5ad file (or any
	matrix in the /layers group), or (4) a 10x Genomics sparse matrix.
	All these containers are DelayedArray extensions and thus support all
	operations (delayed or block-processed) supported by DelayedArray
	objects.
biocViews: Infrastructure, DataRepresentation, DataImport, Sequencing, RNASeq,
	Coverage, Annotation, GenomeAnnotation, SingleCell, ImmunoOncology
URL: https://bioconductor.org/packages/HDF5Array
BugReports: https://github.com/Bioconductor/HDF5Array/issues
Version: 1.35.12
License: Artistic-2.0
Encoding: UTF-8
Authors@R: person("Hervé", "Pagès", role=c("aut", "cre"),
		  email="hpages.on.github@gmail.com",
		  comment=c(ORCID="0009-0002-8272-4522"))
Depends: R (>= 3.4), methods, SparseArray (>= 1.7.5), DelayedArray (>= 0.33.5),
	h5mread (>= 0.99.4)
Imports: utils, stats, tools, Matrix,
	BiocGenerics (>= 0.51.2), S4Vectors, IRanges, S4Arrays (>= 1.1.1), rhdf5
Suggests: BiocParallel, GenomicRanges, SummarizedExperiment (>= 1.15.1),
	h5vcData, ExperimentHub, TENxBrainData, zellkonverter,
	GenomicFeatures, SingleCellExperiment, DelayedMatrixStats, genefilter,
	RSpectra, RUnit, knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
Collate: utils.R
	h5utils.R
	HDF5ArraySeed-class.R
	HDF5Array-class.R
	ReshapedHDF5ArraySeed-class.R
	ReshapedHDF5Array-class.R
	dump-management.R
	writeHDF5Array.R
	saveHDF5SummarizedExperiment.R
	H5SparseMatrixSeed-class.R
	H5SparseMatrix-class.R
	H5ADMatrixSeed-class.R
	H5ADMatrix-class.R
	TENxMatrixSeed-class.R
	TENxMatrix-class.R
	writeTENxMatrix.R
	zzz.R