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‎.env.example

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# example of file for storing private and user specific environment variables, like keys or system paths
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# rename it to ".env" (excluded from version control by default)
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# .env is loaded by train.py automatically
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# hydra allows you to reference variables in .yaml configs with special syntax: ${oc.env:MY_VAR}
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MY_VAR="/home/user/my/system/path"

‎.github/PULL_REQUEST_TEMPLATE.md

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## What does this PR do?
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<!--
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Please include a summary of the change and which issue is fixed.
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Please also include relevant motivation and context.
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List any dependencies that are required for this change.
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List all the breaking changes introduced by this pull request.
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-->
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Fixes #\<issue_number>
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## Before submitting
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- [ ] Did you make sure **title is self-explanatory** and **the description concisely explains the PR**?
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- [ ] Did you make sure your **PR does only one thing**, instead of bundling different changes together?
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- [ ] Did you list all the **breaking changes** introduced by this pull request?
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- [ ] Did you **test your PR locally** with `pytest` command?
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- [ ] Did you **run pre-commit hooks** with `pre-commit run -a` command?
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## Did you have fun?
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Make sure you had fun coding 🙃

‎.github/codecov.yml

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coverage:
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status:
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# measures overall project coverage
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project:
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default:
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threshold: 100% # how much decrease in coverage is needed to not consider success
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# measures PR or single commit coverage
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patch:
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default:
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threshold: 100% # how much decrease in coverage is needed to not consider success
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# project: off
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# patch: off

‎.github/dependabot.yml

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# To get started with Dependabot version updates, you'll need to specify which
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# package ecosystems to update and where the package manifests are located.
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# Please see the documentation for all configuration options:
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# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
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version: 2
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updates:
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- package-ecosystem: "pip" # See documentation for possible values
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directory: "/" # Location of package manifests
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schedule:
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interval: "daily"
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ignore:
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- dependency-name: "pytorch-lightning"
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update-types: ["version-update:semver-patch"]
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- dependency-name: "torchmetrics"
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update-types: ["version-update:semver-patch"]

‎.github/release-drafter.yml

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name-template: "v$RESOLVED_VERSION"
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tag-template: "v$RESOLVED_VERSION"
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categories:
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- title: "🚀 Features"
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labels:
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- "feature"
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- "enhancement"
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- title: "🐛 Bug Fixes"
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labels:
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- "fix"
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- "bugfix"
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- "bug"
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- title: "🧹 Maintenance"
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labels:
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- "maintenance"
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- "dependencies"
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- "refactoring"
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- "cosmetic"
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- "chore"
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- title: "📝️ Documentation"
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labels:
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- "documentation"
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- "docs"
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change-template: "- $TITLE @$AUTHOR (#$NUMBER)"
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change-title-escapes: '\<*_&' # You can add # and @ to disable mentions
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version-resolver:
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major:
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labels:
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- "major"
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minor:
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labels:
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- "minor"
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patch:
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labels:
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- "patch"
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default: patch
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template: |
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## Changes
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$CHANGES

‎.github/workflows/code-quality-main.yaml

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# Same as `code-quality-pr.yaml` but triggered on commit to main branch
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# and runs on all files (instead of only the changed ones)
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name: Code Quality Main
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on:
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push:
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branches: [main]
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jobs:
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code-quality:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout
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uses: actions/checkout@v2
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- name: Set up Python
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uses: actions/setup-python@v2
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- name: Run pre-commits
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uses: pre-commit/[email protected]

‎.github/workflows/code-quality-pr.yaml

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# This workflow finds which files were changed, prints them,
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# and runs `pre-commit` on those files.
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# Inspired by the sktime library:
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# https://github.com/alan-turing-institute/sktime/blob/main/.github/workflows/test.yml
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name: Code Quality PR
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on:
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pull_request:
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branches: [main, "release/*", "dev"]
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jobs:
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code-quality:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout
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uses: actions/checkout@v2
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- name: Set up Python
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uses: actions/setup-python@v2
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- name: Find modified files
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id: file_changes
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uses: trilom/[email protected]
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with:
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output: " "
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- name: List modified files
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run: echo '${{ steps.file_changes.outputs.files}}'
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- name: Run pre-commits
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uses: pre-commit/[email protected]
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with:
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extra_args: --files ${{ steps.file_changes.outputs.files}}

‎.github/workflows/release-drafter.yml

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name: Release Drafter
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on:
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push:
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# branches to consider in the event; optional, defaults to all
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branches:
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- main
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permissions:
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contents: read
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jobs:
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update_release_draft:
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permissions:
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# write permission is required to create a github release
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contents: write
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# write permission is required for autolabeler
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# otherwise, read permission is required at least
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pull-requests: write
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runs-on: ubuntu-latest
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steps:
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# Drafts your next Release notes as Pull Requests are merged into "master"
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- uses: release-drafter/release-drafter@v5
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

‎.github/workflows/test.yml

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name: Tests
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on:
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push:
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branches: [main]
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pull_request:
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branches: [main, "release/*", "dev"]
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jobs:
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run_tests_ubuntu:
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: ["ubuntu-latest"]
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python-version: ["3.8", "3.9", "3.10"]
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timeout-minutes: 20
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steps:
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- name: Checkout
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uses: actions/checkout@v3
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v3
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install dependencies
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run: |
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conda env create -f environment.yml
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python -m pip install --upgrade pip
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pip install pytest
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pip install sh
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- name: List dependencies
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run: |
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python -m pip list
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- name: Run pytest
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run: |
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pytest -v
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run_tests_macos:
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: ["macos-latest"]
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python-version: ["3.8", "3.9", "3.10"]
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timeout-minutes: 20
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steps:
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- name: Checkout
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uses: actions/checkout@v3
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v3
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install dependencies
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run: |
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conda env create -f environment.yml
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python -m pip install --upgrade pip
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pip install pytest
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pip install sh
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- name: List dependencies
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run: |
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python -m pip list
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- name: Run pytest
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run: |
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pytest -v
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run_tests_windows:
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: ["windows-latest"]
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python-version: ["3.8", "3.9", "3.10"]
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timeout-minutes: 20
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steps:
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- name: Checkout
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uses: actions/checkout@v3
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v3
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install dependencies
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run: |
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conda env create -f environment.yml
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python -m pip install --upgrade pip
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pip install pytest
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- name: List dependencies
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run: |
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python -m pip list
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- name: Run pytest
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run: |
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pytest -v
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# upload code coverage report
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code-coverage:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout
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uses: actions/checkout@v2
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- name: Set up Python 3.10
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uses: actions/setup-python@v2
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with:
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python-version: "3.10"
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- name: Install dependencies
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run: |
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conda env create -f environment.yml
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python -m pip install --upgrade pip
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pip install pytest
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pip install pytest-cov[toml]
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pip install sh
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- name: Run tests and collect coverage
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run: pytest --cov flowdock # NEEDS TO BE UPDATED WHEN CHANGING THE NAME OF "src" FOLDER
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- name: Upload coverage to Codecov
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uses: codecov/codecov-action@v3

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