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container image caching (like renee cache) for nextflow & snakemake pipelines #17

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kelly-sovacool opened this issue Oct 25, 2024 · 0 comments
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enhancement New feature or request

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kelly-sovacool commented Oct 25, 2024

Implement similar logic as renee cache and image_cache() for nextflow pipelines, so a shared directory of SIFs can be used.

groovy config

python code for reading groovy conf/containers.config files: https://stackoverflow.com/questions/32216707/parsing-a-groovy-file-in-python

or quick way with bash:
cat conf/containers.config | grep '=' | sed 's/.*= /docker:\/\//g' | sed "s/'//g"

@kelly-sovacool kelly-sovacool added the enhancement New feature or request label Dec 2, 2024
@kelly-sovacool kelly-sovacool changed the title image caching (like renee cache) for nextflow pipelines container image caching (like renee cache) for nextflow & snakemake pipelines Feb 25, 2025
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