changelog.md

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0.1.5

Date 📅 2025_02

Changes in detail

• 'base.config' file is deprecated.

Image Version history

• PTM-compass (1.3):
  • Fixed a bug in the 'PeakSelector' related to the bin width.

Singularity image (version)	Code	Version
ptm-compass:0.1.4
	PTM-compass	1.3
	RefMod	0.4.4

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0.1.4

Date 📅 2025_01

Changes in detail

• Fixing a bug: The fixed parameter contains the TMT delta masses for the 'TrunkSolver_CombList'.

Image Version history

Singularity image (version)	Code	Version
ptm-compass:0.1.3
	PTM-compass	1.2
	RefMod	0.4.4

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0.1.3

Date 📅 2024_12

Highlights

• Include the parameter files.

Changes in detail

• Include the parameter files for: TMT_10-plex, TMT_11-plex, TMT_16-plex, TMT_19-plex, Label-Free.

• Fixing a bug prividing the "database" parameter.

Image Version history

Version	Singularity image	Code	Version
0.1.2
	ptm-compass:0.1.2
		PTM-compass	1.2
		RefMod	0.4.4

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0.1.2

DATE: 2024_12

Highlights

• New release of PTM-compass (v1.2)

Changes

• New release of PTM-compass (v1.2)

Image Version history

Version	Singularity image	Code	Version
0.1.2
	ptm-compass:0.1.2
		PTM-compass	1.2
		RefMod	0.4.4

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0.1.1

DATE: 2024_12

Highlights

• Consolidate the code for SHIFTS, SOLVER, ProteinAssigner, etc., into a single repository.

Changes

• Unify the parameters for each code into a single INI parameter file.

• Update the workflow to accept the MSFragger results.

• SHIFTadapter: Added a module that inserts the ScanID into search engine results.

Image Version history

Version	Singularity image	Code	Version
0.1.1
	ptm-compass:0.1.1
		PTM-compass	1.1
		RefMod	0.4.4

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0.1.0

DATE: 2024_07

Highlights

• Release the first stable version.

Changes

Image Version history

Version	Description	Singularity image	Code	Version
0.1.0	First stable version
		ptm-compass:0.1.0
			RefMod	0.4.3
			SHIFTS	0.4.3
			SOLVER	1.0

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0.0.X

DATE: 2024_XX

Highlights

• Developing the beta version