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come back the correct column name for MSF 4.1
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conf/params/fixed_params_msfragger.ini

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@@ -108,7 +108,7 @@ mzcolumn = precursor_MZ # Name of column containing experimental M/Z (ca
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zcolumn = charge # Name of column containing charge (case-sensitive)
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seqcolumn = peptide # Name of column containing sequence (case-sensitive)
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seqdmcolumn = delta_peptide # Name of column containing sequence with deltamass within square brackets (case-sensitive)
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proteincolumn = proteins # Name of column containing protein IDs (case-sensitive)
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proteincolumn = protein # Name of column containing protein IDs (case-sensitive)
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decoyprefix = DECOY_ # Prefix used for decoy protein IDs (case-sensitive)
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calseqcolumn = Cal_Sequence # Name of output column containing sequence with calibrated deltamass (case-sensitive)
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# begin: variable_param
@@ -145,7 +145,7 @@ recom_score = Closest_Xcorr_corr # Name of column containing Recom score (cas
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comet_score = xcorr_corr # Name of column containing Comet score (case-sensitive)
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recom_deltamass = Closest_Deltamass # Name of column containing the RECOM deltamass (case-sensitive)
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comet_deltamass = cal_dm_mh # Name of column containing the assigned deltamass (case-sensitive)
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protein_column = proteins # Name of column containing protein IDs (case-sensitive)
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protein_column = protein # Name of column containing protein IDs (case-sensitive)
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decoyprefix = DECOY_ # Prefix used for decoy protein IDs (case-sensitive)
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# begin: variable_param
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increase_threshold = 1 # FDR threshold for significant increases in score

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