From 3a7498d86dbf8ebe6e9411daf2ab7ee57d4e3188 Mon Sep 17 00:00:00 2001
From: lara <lara@localhost.localdomain>
Date: Thu, 13 Feb 2025 14:22:21 +0100
Subject: [PATCH 01/27] Test is non CUDA builds are not add to accelorator path
 with jax

---
 .../2023.06/accel/nvidia/eessi-2023.06-eb-4.9.4-2023a-CUDA.yml   | 1 +
 1 file changed, 1 insertion(+)

diff --git a/easystacks/software.eessi.io/2023.06/accel/nvidia/eessi-2023.06-eb-4.9.4-2023a-CUDA.yml b/easystacks/software.eessi.io/2023.06/accel/nvidia/eessi-2023.06-eb-4.9.4-2023a-CUDA.yml
index 7ac4ba6cca..6408ec74c1 100644
--- a/easystacks/software.eessi.io/2023.06/accel/nvidia/eessi-2023.06-eb-4.9.4-2023a-CUDA.yml
+++ b/easystacks/software.eessi.io/2023.06/accel/nvidia/eessi-2023.06-eb-4.9.4-2023a-CUDA.yml
@@ -5,3 +5,4 @@ easyconfigs:
       options:
         # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21699
         from-commit: e3407bd127d248c08960f6b09c973da0fdecc2c3
+  - jax-0.4.25-gfbf-2023a-CUDA-12.1.1.eb

From b008485ebe7e92f1c274f19ceb48a4c5fb7db4c8 Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 12:33:57 +0100
Subject: [PATCH 02/27] Create test-check_easystacks.yml

---
 .github/workflows/test-check_easystacks.yml | 96 +++++++++++++++++++++
 1 file changed, 96 insertions(+)
 create mode 100644 .github/workflows/test-check_easystacks.yml

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
new file mode 100644
index 0000000000..1b363e1bb2
--- /dev/null
+++ b/.github/workflows/test-check_easystacks.yml
@@ -0,0 +1,96 @@
+# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
+name: Check for CUDA builds in changed easystacks
+on:
+  push:
+    branches: [ "*-software.eessi.io" ]
+  pull_request:
+  workflow_dispatch:
+permissions:
+  contents: read # to fetch code (actions/checkout)
+env:
+  EESSI_ACCELERATOR_TARGETS: |
+    x86_64/amd/zen2:
+      - nvidia/cc80
+    x86_64/amd/zen3:
+      - nvidia/cc80
+jobs:
+  check_missing:
+    runs-on: ubuntu-24.04
+    strategy:
+      fail-fast: false
+      matrix:
+        EESSI_VERSION:
+        - 2023.06
+        EESSI_SOFTWARE_SUBDIR_OVERRIDE:
+        - x86_64/amd/zen2
+        - x86_64/amd/zen3
+        - x86_64/amd/zen4
+        - x86_64/intel/haswell
+        - x86_64/intel/skylake_avx512
+        - x86_64/generic
+    steps:
+        - name: Check out software-layer repository
+          uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
+
+        - name: Mount EESSI CernVM-FS pilot repository
+          uses: cvmfs-contrib/github-action-cvmfs@55899ca74cf78ab874bdf47f5a804e47c198743c # v4.0
+          with:
+              cvmfs_config_package: https://github.com/EESSI/filesystem-layer/releases/download/latest/cvmfs-config-eessi_latest_all.deb
+              cvmfs_http_proxy: DIRECT
+              cvmfs_repositories: software.eessi.io
+              filters: |
+                changed:
+                  -'easystacks/**'
+
+        - name: Test check_missing_installations.sh script
+          if: ${{ steps.changes.outputs.changed == 'true' }}
+          run: |
+              export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}}
+              source /cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}/init/bash
+              # set $EESSI_CPU_FAMILY to the CPU architecture that corresponds to $EESSI_SOFTWARE_SUBDIR_OVERRIDE (part before the first slash),
+              # to prevent issues with checks in the Easybuild configuration that use this variable
+              export EESSI_CPU_FAMILY=${EESSI_SOFTWARE_SUBDIR_OVERRIDE%%/*}
+              module load EasyBuild
+              which eb
+              eb --version
+              export EESSI_PREFIX=/cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}
+              export EESSI_OS_TYPE=linux
+              env | grep ^EESSI | sort
+
+              # check for missing installations if a file in the easystacks directory is changed
+              echo 
+
+              # first check the CPU-only builds for this CPU target
+              #echo "just run check_missing_installations.sh (should use easystacks/software.eessi.io/${{matrix.EESSI_VERSION}}/eessi-${{matrix.EESSI_VERSION}}-*.yml with latest EasyBuild release)"
+              #for easystack_file in $(EESSI_VERSION=${{matrix.EESSI_VERSION}} .github/workflows/scripts/only_latest_easystacks.sh); do
+              #    echo "check missing installations for ${easystack_file}..."
+              #    ./check_missing_installations.sh ${easystack_file}
+              #    ec=$?
+              #    if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi
+              #done
+
+              # now check the accelerator builds for this CPU target
+              #accelerators=$(echo "${EESSI_ACCELERATOR_TARGETS}" | yq ".${EESSI_SOFTWARE_SUBDIR_OVERRIDE}[]")
+              #if [ -z ${accelerators} ]; then
+              #    echo "no accelerator targets defined for ${EESSI_SOFTWARE_SUBDIR_OVERRIDE}"
+              #else
+              #    for accel in ${accelerators}; do
+              #        module use ${EESSI_SOFTWARE_PATH}/accel/${accel}/modules/all
+              #        echo "checking missing installations for accelerator ${accel} using modulepath: ${MODULEPATH}"
+              #        for easystack_file in $(EESSI_VERSION=${{matrix.EESSI_VERSION}} ACCEL_EASYSTACKS=1 .github/workflows/scripts/only_latest_easystacks.sh); do
+              #            echo "check missing installations for ${easystack_file}..."
+              #            ./check_missing_installations.sh ${easystack_file}
+              #            ec=$?
+              #            if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi
+              #        done
+              #        module unuse ${EESSI_SOFTWARE_PATH}/accel/${accel}/modules/all
+              #    done
+              #fi */
+
+              #if ./check_missing_installations.sh ${easystack_file}; then
+              #  echo "did NOT capture missing package; test FAILED"
+              #  exit 1
+              #else
+              #  echo "captured missing package; test PASSED"
+                exit 0
+              fi

From fb7ceaea24112c3a8b5431aa0d2eb1326e64ad92 Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 12:40:02 +0100
Subject: [PATCH 03/27] add the filter for changed easystack files

---
 .github/workflows/test-check_easystacks.yml | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 1b363e1bb2..5d83921c1c 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -38,10 +38,13 @@ jobs:
               cvmfs_config_package: https://github.com/EESSI/filesystem-layer/releases/download/latest/cvmfs-config-eessi_latest_all.deb
               cvmfs_http_proxy: DIRECT
               cvmfs_repositories: software.eessi.io
-              filters: |
-                changed:
-                  -'easystacks/**'
-
+        - name: find changed easystacks
+          uses: dorny/paths-filter@v3
+          id: changes
+          with:
+            filters: |
+              changed:
+                -'easystacks/**'
         - name: Test check_missing_installations.sh script
           if: ${{ steps.changes.outputs.changed == 'true' }}
           run: |

From c4b39d36405f40c531ac7ced7d11585f1040ac8b Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 13:11:49 +0100
Subject: [PATCH 04/27] fix syntax of yml file

---
 .github/workflows/test-check_easystacks.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 5d83921c1c..30939b2118 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -44,7 +44,7 @@ jobs:
           with:
             filters: |
               changed:
-                -'easystacks/**'
+                - 'easystacks/**'
         - name: Test check_missing_installations.sh script
           if: ${{ steps.changes.outputs.changed == 'true' }}
           run: |

From 5b5434a4dd04dbc786f18075b77721a7a759012e Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 13:30:52 +0100
Subject: [PATCH 05/27] run check_missing_installation.sh in workflow

---
 .github/workflows/test-check_easystacks.yml | 17 +++++++----------
 1 file changed, 7 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 30939b2118..a0792a9bf6 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -61,16 +61,13 @@ jobs:
               env | grep ^EESSI | sort
 
               # check for missing installations if a file in the easystacks directory is changed
-              echo 
-
-              # first check the CPU-only builds for this CPU target
-              #echo "just run check_missing_installations.sh (should use easystacks/software.eessi.io/${{matrix.EESSI_VERSION}}/eessi-${{matrix.EESSI_VERSION}}-*.yml with latest EasyBuild release)"
-              #for easystack_file in $(EESSI_VERSION=${{matrix.EESSI_VERSION}} .github/workflows/scripts/only_latest_easystacks.sh); do
-              #    echo "check missing installations for ${easystack_file}..."
-              #    ./check_missing_installations.sh ${easystack_file}
-              #    ec=$?
-              #    if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi
-              #done
+              echo "check for missing installation in changed easystack files"
+              for easystack_file in ${{ steps.changes.outputs.changed_files }}; do
+                  echo "check missing installatios for ${easystack_file}..."
+                  ./check_missing_installations.sh ${easystack_file}
+                  ec=$?
+                  echo "print the output of missing: ${eb_missing_out}"
+              done
 
               # now check the accelerator builds for this CPU target
               #accelerators=$(echo "${EESSI_ACCELERATOR_TARGETS}" | yq ".${EESSI_SOFTWARE_SUBDIR_OVERRIDE}[]")

From b875d62dd3b2210094c568b506abc3201c4730ea Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 13:39:44 +0100
Subject: [PATCH 06/27] debugging checking missing installation step

---
 .github/workflows/test-check_easystacks.yml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index a0792a9bf6..8fdc02b7f1 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -62,7 +62,9 @@ jobs:
 
               # check for missing installations if a file in the easystacks directory is changed
               echo "check for missing installation in changed easystack files"
-              for easystack_file in ${{ steps.changes.outputs.changed_files }}; do
+              echo ${{ steps.changes.outputs.changed_files }}
+              
+              for easystack_file in (${{ steps.changes.outputs.changed_files }}); do
                   echo "check missing installatios for ${easystack_file}..."
                   ./check_missing_installations.sh ${easystack_file}
                   ec=$?

From 9a981a59560b944477e8fd6ef3d2d7f25d02dcfd Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 13:48:44 +0100
Subject: [PATCH 07/27] debugging getting changed file

---
 .github/workflows/test-check_easystacks.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 8fdc02b7f1..49c094a7e7 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -62,9 +62,10 @@ jobs:
 
               # check for missing installations if a file in the easystacks directory is changed
               echo "check for missing installation in changed easystack files"
+              echo ${{ steps.changes.outputs }}
               echo ${{ steps.changes.outputs.changed_files }}
               
-              for easystack_file in (${{ steps.changes.outputs.changed_files }}); do
+              for easystack_file in ${{ steps.changes.outputs.changed_files }}; do
                   echo "check missing installatios for ${easystack_file}..."
                   ./check_missing_installations.sh ${easystack_file}
                   ec=$?

From e8acea1febb322804701814c754155dc21f05a2c Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 13:52:26 +0100
Subject: [PATCH 08/27] debugging getting changed file

---
 .github/workflows/test-check_easystacks.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 49c094a7e7..04ef7f0c04 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -42,6 +42,7 @@ jobs:
           uses: dorny/paths-filter@v3
           id: changes
           with:
+            list-files: shell
             filters: |
               changed:
                 - 'easystacks/**'

From 10d28378c5bcb1bfdc0e2ae652a0184b6f29ea2a Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 14:07:25 +0100
Subject: [PATCH 09/27] trying to get the list of missing installations

---
 .github/workflows/test-check_easystacks.yml | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 04ef7f0c04..fc42df2186 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -63,13 +63,12 @@ jobs:
 
               # check for missing installations if a file in the easystacks directory is changed
               echo "check for missing installation in changed easystack files"
-              echo ${{ steps.changes.outputs }}
-              echo ${{ steps.changes.outputs.changed_files }}
               
-              for easystack_file in ${{ steps.changes.outputs.changed_files }}; do
+              for easystack_file in (${{ steps.changes.outputs.changed_files }}); do
                   echo "check missing installatios for ${easystack_file}..."
                   ./check_missing_installations.sh ${easystack_file}
                   ec=$?
+                  if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi
                   echo "print the output of missing: ${eb_missing_out}"
               done
 

From aedb5ebbf8e3aa5bf02586e3706015f810a2be8c Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 14:41:09 +0100
Subject: [PATCH 10/27] fix bash syntax

---
 .github/workflows/test-check_easystacks.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index fc42df2186..b360c1b53e 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -63,8 +63,9 @@ jobs:
 
               # check for missing installations if a file in the easystacks directory is changed
               echo "check for missing installation in changed easystack files"
+              easystack_files=(${{ steps.changes.outputs.changed_files }})
               
-              for easystack_file in (${{ steps.changes.outputs.changed_files }}); do
+              for easystack_file in easystack_files; do
                   echo "check missing installatios for ${easystack_file}..."
                   ./check_missing_installations.sh ${easystack_file}
                   ec=$?

From 951ad4a1550e7573b805116b639e402ad487246e Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 15:00:39 +0100
Subject: [PATCH 11/27] debugging

---
 .github/workflows/test-check_easystacks.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index b360c1b53e..5e0439e161 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -65,7 +65,7 @@ jobs:
               echo "check for missing installation in changed easystack files"
               easystack_files=(${{ steps.changes.outputs.changed_files }})
               
-              for easystack_file in easystack_files; do
+              for easystack_file in ${easystack_files[@]}; do
                   echo "check missing installatios for ${easystack_file}..."
                   ./check_missing_installations.sh ${easystack_file}
                   ec=$?

From 561ee5e323f2e499c91ee460b9147b54ced0e442 Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 16:00:45 +0100
Subject: [PATCH 12/27] debugging

---
 .github/workflows/test-check_easystacks.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 5e0439e161..d5209d2fd7 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -69,6 +69,7 @@ jobs:
                   echo "check missing installatios for ${easystack_file}..."
                   ./check_missing_installations.sh ${easystack_file}
                   ec=$?
+                  echo "print what  is in ${ec}"
                   if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi
                   echo "print the output of missing: ${eb_missing_out}"
               done

From 0151275813e138c718ede58cabb7246fd6f19fff Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 16:12:26 +0100
Subject: [PATCH 13/27] debugging workflow

---
 .github/workflows/test-check_easystacks.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index d5209d2fd7..a290824fa8 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -48,6 +48,7 @@ jobs:
                 - 'easystacks/**'
         - name: Test check_missing_installations.sh script
           if: ${{ steps.changes.outputs.changed == 'true' }}
+          continue-on-error: true
           run: |
               export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}}
               source /cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}/init/bash

From bff29c9d0465ab5b1ddbc3f1280184bb7ada5798 Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Tue, 25 Feb 2025 16:27:31 +0100
Subject: [PATCH 14/27] debugging

---
 .github/workflows/test-check_easystacks.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index a290824fa8..dce36d73f4 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -47,8 +47,8 @@ jobs:
               changed:
                 - 'easystacks/**'
         - name: Test check_missing_installations.sh script
-          if: ${{ steps.changes.outputs.changed == 'true' }}
           continue-on-error: true
+          if: ${{ steps.changes.outputs.changed == 'true' }}
           run: |
               export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}}
               source /cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}/init/bash

From a860642b98ce9df51e0fa45cec8f49634ee437ff Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Wed, 26 Feb 2025 12:13:17 +0100
Subject: [PATCH 15/27] Don't stop workflow due to failed missing installations

---
 .github/workflows/test-check_easystacks.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index dce36d73f4..9c818c6b6e 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -68,7 +68,7 @@ jobs:
               
               for easystack_file in ${easystack_files[@]}; do
                   echo "check missing installatios for ${easystack_file}..."
-                  ./check_missing_installations.sh ${easystack_file}
+                  ./check_missing_installations.sh ${easystack_file} || [ $? -ne 0 ]
                   ec=$?
                   echo "print what  is in ${ec}"
                   if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi

From 9d3f2fede30bf4bf532cd13324741ce0cdd3cf95 Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Wed, 26 Feb 2025 12:28:10 +0100
Subject: [PATCH 16/27] get exit code of run check-missing-installations.sh

---
 .github/workflows/test-check_easystacks.yml | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 9c818c6b6e..1a0e67b70d 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -68,9 +68,7 @@ jobs:
               
               for easystack_file in ${easystack_files[@]}; do
                   echo "check missing installatios for ${easystack_file}..."
-                  ./check_missing_installations.sh ${easystack_file} || [ $? -ne 0 ]
-                  ec=$?
-                  echo "print what  is in ${ec}"
+                  ./check_missing_installations.sh ${easystack_file} || ec=$?
                   if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi
                   echo "print the output of missing: ${eb_missing_out}"
               done

From 555a3d15a8300169e4de8766f60aa3fc4a91bc10 Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Wed, 26 Feb 2025 14:23:21 +0100
Subject: [PATCH 17/27] add script for parsing missing installations output

---
 .../parse_missing-installations-output.py        | 16 ++++++++++++++++
 1 file changed, 16 insertions(+)
 create mode 100644 .github/workflows/parse_missing-installations-output.py

diff --git a/.github/workflows/parse_missing-installations-output.py b/.github/workflows/parse_missing-installations-output.py
new file mode 100644
index 0000000000..3743675ffd
--- /dev/null
+++ b/.github/workflows/parse_missing-installations-output.py
@@ -0,0 +1,16 @@
+import os
+import re
+
+eb_missing_out = os.environ['eb_missing_out'])
+missing = re.findall("\([A-Z_a-z0-9_\-_\.]*.eb\)", missing)
+missing_cuda = []
+missing_cpu = []
+for ec in missing:
+    if re.search('CUDA', ec):
+        missing_cuda.append(ec)
+    else:
+        missing_cpu.append(ec)
+if len(missing_cpu) != 0:
+    os.environ['missing_cpu'] = missing_cpu
+if len(missing_gpu) !0:
+    os.environ['missing_cpu'] = missing_cpu

From c7a7758c4f9302c2556a99610423a3f5fcd820c7 Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Wed, 26 Feb 2025 14:29:25 +0100
Subject: [PATCH 18/27] fix parse script

---
 .github/workflows/parse_missing-installations-output.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/parse_missing-installations-output.py b/.github/workflows/parse_missing-installations-output.py
index 3743675ffd..2a5afda447 100644
--- a/.github/workflows/parse_missing-installations-output.py
+++ b/.github/workflows/parse_missing-installations-output.py
@@ -2,7 +2,7 @@
 import re
 
 eb_missing_out = os.environ['eb_missing_out'])
-missing = re.findall("\([A-Z_a-z0-9_\-_\.]*.eb\)", missing)
+missing = re.findall("\([A-Z_a-z0-9_\-_\.]*.eb\)", eb_missing_out)
 missing_cuda = []
 missing_cpu = []
 for ec in missing:

From 754faa4b0a49e7a766292405e0a6812b753c256f Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Wed, 26 Feb 2025 14:31:23 +0100
Subject: [PATCH 19/27] fix parse script

---
 .github/workflows/parse_missing-installations-output.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/parse_missing-installations-output.py b/.github/workflows/parse_missing-installations-output.py
index 2a5afda447..804ba449a4 100644
--- a/.github/workflows/parse_missing-installations-output.py
+++ b/.github/workflows/parse_missing-installations-output.py
@@ -12,5 +12,5 @@
         missing_cpu.append(ec)
 if len(missing_cpu) != 0:
     os.environ['missing_cpu'] = missing_cpu
-if len(missing_gpu) !0:
+if len(missing_gpu) != 0:
     os.environ['missing_cpu'] = missing_cpu

From 41df4465b881cea904834795014d52cfb4b6f269 Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Wed, 26 Feb 2025 14:48:27 +0100
Subject: [PATCH 20/27] fix parse script

---
 .github/workflows/parse_missing-installations-output.py | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/parse_missing-installations-output.py b/.github/workflows/parse_missing-installations-output.py
index 804ba449a4..d4d930f332 100644
--- a/.github/workflows/parse_missing-installations-output.py
+++ b/.github/workflows/parse_missing-installations-output.py
@@ -1,7 +1,7 @@
 import os
 import re
 
-eb_missing_out = os.environ['eb_missing_out'])
+eb_missing_out = os.environ['eb_missing_out']
 missing = re.findall("\([A-Z_a-z0-9_\-_\.]*.eb\)", eb_missing_out)
 missing_cuda = []
 missing_cpu = []
@@ -11,6 +11,6 @@
     else:
         missing_cpu.append(ec)
 if len(missing_cpu) != 0:
-    os.environ['missing_cpu'] = missing_cpu
-if len(missing_gpu) != 0:
-    os.environ['missing_cpu'] = missing_cpu
+    os.environ['MISSING_CPU'] = str(missing_cpu)
+if len(missing_cuda) != 0:
+    os.environ['MISSING_CUDA'] = str(missing_cuda)

From 6d1cd82730cd770a6c3f5a8044f08bb1bf8aada4 Mon Sep 17 00:00:00 2001
From: vsc46128 vscuser <vsc46128@gligar09.gastly.os>
Date: Wed, 26 Feb 2025 16:43:45 +0100
Subject: [PATCH 21/27] add workflow to check the missing builds in the pr

---
 .../parse_missing-installations-output.py     | 19 +++++++++++++------
 .github/workflows/test-check_easystacks.yml   |  6 ++++--
 2 files changed, 17 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/parse_missing-installations-output.py b/.github/workflows/parse_missing-installations-output.py
index d4d930f332..5b4379bbf5 100644
--- a/.github/workflows/parse_missing-installations-output.py
+++ b/.github/workflows/parse_missing-installations-output.py
@@ -1,8 +1,8 @@
 import os
 import re
 
-eb_missing_out = os.environ['eb_missing_out']
-missing = re.findall("\([A-Z_a-z0-9_\-_\.]*.eb\)", eb_missing_out)
+missing = os.environ['missing']
+missing = missing.split('\n')
 missing_cuda = []
 missing_cpu = []
 for ec in missing:
@@ -10,7 +10,14 @@
         missing_cuda.append(ec)
     else:
         missing_cpu.append(ec)
-if len(missing_cpu) != 0:
-    os.environ['MISSING_CPU'] = str(missing_cpu)
-if len(missing_cuda) != 0:
-    os.environ['MISSING_CUDA'] = str(missing_cuda)
+if len(missing_cpu) != 0 and len(missing_cuda) != 0:
+    print('Error: CPU dependencies for a GPU build must be submitted in a seperate pr')
+    print(f'Please open a seperate pr of the dependencies: {missing_cpu}')
+    exit(1)
+elif len(missing_cuda) != 0:
+    # TODO: Make this set the accelorator label?
+    print(f'Have fun installing the following gpu builds: {missing_cuda}')
+elif len(missing_cpu) != 0:
+    print(f'Have fun installing the following gpu builds: {missing_cpu}')
+else:
+    print('no missing modules')
diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 1a0e67b70d..50ba31b0a3 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -69,8 +69,10 @@ jobs:
               for easystack_file in ${easystack_files[@]}; do
                   echo "check missing installatios for ${easystack_file}..."
                   ./check_missing_installations.sh ${easystack_file} || ec=$?
-                  if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi
-                  echo "print the output of missing: ${eb_missing_out}"
+                  if [[ ${ec} -ne 0 ]]; then 
+                      echo "missing installations found for ${easystack_file}!" >&2
+                      python .github/workflows/parse_missing-installations-output.py 
+                  fi
               done
 
               # now check the accelerator builds for this CPU target

From bf0e3fa82f31b00a3e6f587b2d90241e1f478c54 Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Wed, 26 Feb 2025 16:47:16 +0100
Subject: [PATCH 22/27] fix check easystack workflow

---
 .github/workflows/test-check_easystacks.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 50ba31b0a3..ceca47ed18 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -71,6 +71,7 @@ jobs:
                   ./check_missing_installations.sh ${easystack_file} || ec=$?
                   if [[ ${ec} -ne 0 ]]; then 
                       echo "missing installations found for ${easystack_file}!" >&2
+                      export missing=$(env | grep .eb\) | tr -d \*)
                       python .github/workflows/parse_missing-installations-output.py 
                   fi
               done

From b4fff2ea1cb1e4c0074dad5984b807ae1c07f88e Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Wed, 26 Feb 2025 16:50:19 +0100
Subject: [PATCH 23/27] fix workflow

---
 .github/workflows/test-check_easystacks.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index ceca47ed18..065a4ace3a 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -68,7 +68,7 @@ jobs:
               
               for easystack_file in ${easystack_files[@]}; do
                   echo "check missing installatios for ${easystack_file}..."
-                  ./check_missing_installations.sh ${easystack_file} || ec=$?
+                  export eb_missing_out=$(./check_missing_installations.sh ${easystack_file} || ec=$?)
                   if [[ ${ec} -ne 0 ]]; then 
                       echo "missing installations found for ${easystack_file}!" >&2
                       export missing=$(env | grep .eb\) | tr -d \*)

From bbac63b10d7c43576e0f212a728370fb01fd9f09 Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Wed, 26 Feb 2025 17:21:07 +0100
Subject: [PATCH 24/27] debugging workflow

---
 .github/workflows/test-check_easystacks.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 065a4ace3a..19c44677e4 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -68,7 +68,7 @@ jobs:
               
               for easystack_file in ${easystack_files[@]}; do
                   echo "check missing installatios for ${easystack_file}..."
-                  export eb_missing_out=$(./check_missing_installations.sh ${easystack_file} || ec=$?)
+                  export eb_missing_out=$(./check_missing_installations.sh ${easystack_file} >&1 || ec=$?)
                   if [[ ${ec} -ne 0 ]]; then 
                       echo "missing installations found for ${easystack_file}!" >&2
                       export missing=$(env | grep .eb\) | tr -d \*)

From e17f9da15ab50db69b41430482ddcf90d66f40ce Mon Sep 17 00:00:00 2001
From: Lara Ramona Peeters <49882639+laraPPr@users.noreply.github.com>
Date: Wed, 26 Feb 2025 17:26:36 +0100
Subject: [PATCH 25/27] debugging workflow

---
 .github/workflows/test-check_easystacks.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 19c44677e4..d4304e8558 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -68,7 +68,8 @@ jobs:
               
               for easystack_file in ${easystack_files[@]}; do
                   echo "check missing installatios for ${easystack_file}..."
-                  export eb_missing_out=$(./check_missing_installations.sh ${easystack_file} >&1 || ec=$?)
+                  ./check_missing_installations.sh ${easystack_file} >&1 || ec=$?
+                  export eb_missing_out=$(./check_missing_installations.sh ${easystack_file})
                   if [[ ${ec} -ne 0 ]]; then 
                       echo "missing installations found for ${easystack_file}!" >&2
                       export missing=$(env | grep .eb\) | tr -d \*)

From 9e29265383a131f1d64652a651987023d7d34200 Mon Sep 17 00:00:00 2001
From: vsc46128 vscuser <vsc46128@gligar09.gastly.os>
Date: Wed, 26 Feb 2025 17:40:18 +0100
Subject: [PATCH 26/27] clean-up workflow

---
 .github/workflows/parse_missing-installations-output.py | 2 +-
 .github/workflows/test-check_easystacks.yml             | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/parse_missing-installations-output.py b/.github/workflows/parse_missing-installations-output.py
index 5b4379bbf5..9ea3260550 100644
--- a/.github/workflows/parse_missing-installations-output.py
+++ b/.github/workflows/parse_missing-installations-output.py
@@ -11,8 +11,8 @@
     else:
         missing_cpu.append(ec)
 if len(missing_cpu) != 0 and len(missing_cuda) != 0:
-    print('Error: CPU dependencies for a GPU build must be submitted in a seperate pr')
     print(f'Please open a seperate pr of the dependencies: {missing_cpu}')
+    os.write(2, b'Error: CPU dependencies for a GPU build must be submitted in a seperate pr')
     exit(1)
 elif len(missing_cuda) != 0:
     # TODO: Make this set the accelorator label?
diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index d4304e8558..6c62cea9c6 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -68,7 +68,7 @@ jobs:
               
               for easystack_file in ${easystack_files[@]}; do
                   echo "check missing installatios for ${easystack_file}..."
-                  ./check_missing_installations.sh ${easystack_file} >&1 || ec=$?
+                  ./check_missing_installations.sh ${easystack_file} || ec=$?
                   export eb_missing_out=$(./check_missing_installations.sh ${easystack_file})
                   if [[ ${ec} -ne 0 ]]; then 
                       echo "missing installations found for ${easystack_file}!" >&2

From 8f15037dcd9ef380b9b736185c33fd5a11b9cb70 Mon Sep 17 00:00:00 2001
From: vsc46128 vscuser <vsc46128@gligar09.gastly.os>
Date: Wed, 26 Feb 2025 17:44:22 +0100
Subject: [PATCH 27/27] remove continue on error

---
 .github/workflows/parse_missing-installations-output.py | 2 +-
 .github/workflows/test-check_easystacks.yml             | 1 -
 2 files changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/parse_missing-installations-output.py b/.github/workflows/parse_missing-installations-output.py
index 9ea3260550..9d399e1a23 100644
--- a/.github/workflows/parse_missing-installations-output.py
+++ b/.github/workflows/parse_missing-installations-output.py
@@ -12,7 +12,7 @@
         missing_cpu.append(ec)
 if len(missing_cpu) != 0 and len(missing_cuda) != 0:
     print(f'Please open a seperate pr of the dependencies: {missing_cpu}')
-    os.write(2, b'Error: CPU dependencies for a GPU build must be submitted in a seperate pr')
+    os.write(2, b'Error: CPU dependencies for CUDA build must be build in a seperate pr')
     exit(1)
 elif len(missing_cuda) != 0:
     # TODO: Make this set the accelorator label?
diff --git a/.github/workflows/test-check_easystacks.yml b/.github/workflows/test-check_easystacks.yml
index 6c62cea9c6..42aa87d706 100644
--- a/.github/workflows/test-check_easystacks.yml
+++ b/.github/workflows/test-check_easystacks.yml
@@ -47,7 +47,6 @@ jobs:
               changed:
                 - 'easystacks/**'
         - name: Test check_missing_installations.sh script
-          continue-on-error: true
           if: ${{ steps.changes.outputs.changed == 'true' }}
           run: |
               export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}}