Skip to content

Commit 877c742

Browse files
committed
docs(Update the install process): Modify to point downloads to ACE server
1 parent 6753520 commit 877c742

File tree

1 file changed

+20
-3
lines changed

1 file changed

+20
-3
lines changed

docs/src/installing/index.rst

+20-3
Original file line numberDiff line numberDiff line change
@@ -119,12 +119,29 @@ GTDB-Tk reference data
119119

120120
GTDB-Tk requires ~110G of external data that needs to be downloaded and unarchived:
121121

122+
For full package:
123+
122124
.. code-block:: bash
123125
124-
wget https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz
125-
wget https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz (or, mirror)
126+
wget https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz
127+
wget https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz ( mirror for Australia)
126128
tar xvzf gtdbtk_data.tar.gz
127129
130+
For split package:
131+
132+
To create an archive from the GTDB-Tk release data parts:
133+
134+
1. Ensure all parts of the GTDB-Tk release data are in the same directory.
135+
2. Open a terminal or command prompt.
136+
3. Navigate to the directory containing the parts of the GTDB-Tk release data.
137+
4. Use the following command to concatenate all parts into a single archive:
138+
cat gtdbtk_r220_data.tar.gz.part_* > gtdbtk_r220_data.tar.gz
139+
140+
5. Once the command finishes executing, you will have a single archive file named 'gtdbtk_r220_data.tar.gz' in the same directory.
141+
142+
You can find the gtdbtk_r220_data.tar.gz.part_* files under:
143+
https://data.ace.uq.edu.au/public/gtdb/data/releases/release220/220.0/auxillary_files/gtdbtk_package/split_package/gtdbtk_r220_data.tar.gz.part_aa
144+
128145

129146
.. note:: Note that different versions of the GTDB release data may not run on all versions of GTDB-Tk, check the supported versions!
130147

@@ -137,7 +154,7 @@ GTDB-Tk requires ~110G of external data that needs to be downloaded and unarchiv
137154
- Minimum version
138155
- Maximum version
139156
- MD5
140-
* - `R220 <https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/gtdbtk_package/full_package/gtdbtk_r220_data.tar.gz>`_
157+
* - `R220 <https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz>`_
141158
- 2.4.0
142159
- Current
143160
- 5aafa1b9c27ceda003d75adf238ed9e0

0 commit comments

Comments
 (0)