@@ -119,12 +119,29 @@ GTDB-Tk reference data
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GTDB-Tk requires ~110G of external data that needs to be downloaded and unarchived:
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+ For full package:
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+
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.. code-block :: bash
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- wget https://data.gtdb.ecogenomic.org /releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz
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- wget https://data.ace.uq.edu.au/public/gtdb/data/ releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz (or, mirror)
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+ wget https://data.ace.uq.edu.au/public/gtdb/data /releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz
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+ wget https://data.gtdb.ecogenomic.org/ releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz ( mirror for Australia )
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tar xvzf gtdbtk_data.tar.gz
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+ For split package:
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+
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+ To create an archive from the GTDB-Tk release data parts:
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+ 1. Ensure all parts of the GTDB-Tk release data are in the same directory.
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+ 2. Open a terminal or command prompt.
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+ 3. Navigate to the directory containing the parts of the GTDB-Tk release data.
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+ 4. Use the following command to concatenate all parts into a single archive:
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+ cat gtdbtk_r220_data.tar.gz.part_* > gtdbtk_r220_data.tar.gz
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+ 5. Once the command finishes executing, you will have a single archive file named 'gtdbtk_r220_data.tar.gz' in the same directory.
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+ You can find the gtdbtk_r220_data.tar.gz.part_* files under:
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+ https://data.ace.uq.edu.au/public/gtdb/data/releases/release220/220.0/auxillary_files/gtdbtk_package/split_package/gtdbtk_r220_data.tar.gz.part_aa
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+
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.. note :: Note that different versions of the GTDB release data may not run on all versions of GTDB-Tk, check the supported versions!
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@@ -137,7 +154,7 @@ GTDB-Tk requires ~110G of external data that needs to be downloaded and unarchiv
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- Minimum version
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- Maximum version
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- MD5
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- * - `R220 <https://data.gtdb.ecogenomic.org/releases/release220/220.0/ auxillary_files/gtdbtk_package/full_package/gtdbtk_r220_data .tar.gz >`_
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+ * - `R220 <https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/ auxillary_files/gtdbtk_package/full_package/gtdbtk_data .tar.gz >`_
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- 2.4.0
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- Current
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- 5aafa1b9c27ceda003d75adf238ed9e0
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