python-package.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Tests

on:
  push:
    branches: [master]
  pull_request:
    branches: [master]

jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.10", "3.11", "3.12", "3.13"]

    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          cache: pip
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install -e .[test]
      - name: Lint with flake8
        run: |
          # stop the build if there are Python syntax errors or undefined names
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=80 --statistics
      - name: Test with pytest and coverage
        run: |
          coverage run --source=pdbx -m pytest
          coverage report -m | tee coverage.txt
          coverage xml
          coverage html
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4
        with:
          files: coverage.xml
          token: ${{ secrets.CODECOV_TOKEN }}
          fail_ci_if_error: false
      - name: Store coverage text results
        uses: actions/upload-artifact@v4
        with:
          name: coverage-text-${{ matrix.python-version }}
          path: coverage.txt
      - name: Store coverage HTML results
        uses: actions/upload-artifact@v4
        with:
          name: coverage-html-${{ matrix.python-version }}
          path: htmlcov/*