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README.md

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@@ -5,16 +5,23 @@ This is a scratch repo for the OME-NGFF Hackathon Zurich 2024
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required cellpose version: 2.2.1
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**Input**
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**Input**:
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Shape: (279, 2, 91, 554, 928)
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Size: ~50 gb
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**Example for otsu segmentation**:
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n_workers = 4
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threads_per_worker = 1
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region_shape = (1, 1, 91, 554, 928)
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Output chunks: (1, 1, 48, 128, 128)
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Read-process-write took roughly 4-5 min.
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[<img src="figures/otsu.png">](https://github.com/Euro-BioImaging/zarr_parallel_processing)

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