Alright.

Author: jeremyjyang

README.md

@@ -7,34 +7,36 @@ via HTTP clients.
 
 ### Files:
 
- *	`.htaccess` - Apache config, associates handlers with filetypes.
- *	`catalog.py`
- *	`convertName2CID.py`
- *	`drug_sim.R`
- *	`fileupload.html`
- *	`generalSearch_test1.py`
- *	`generalSearch_test2.py`
- *	`makePairs.R`
- *	`odbc6.py`
- *	`pathfinder_m.py`
- *	`pathfinder_rank1_backup.py`
- *	`pathfinder_rank2_backup.py`
- *	`pathfinder_rank3_backup.py`
- *	`pathfinder_rank5.py`
- *	`pathfinder_rank_advanced.py`
- *	`pathfinder_rank_backup.py`
- *	`pathfinder_rank_backup_R.py`
- *	`ppDrugTargetPrediction1.py`
- *	`ppPairPrediction2.py`
- *	`ppPairPrediction_local.py`
- *	`prediction1.py`
- *	`prediction2_backup.py`
- *	`save_file.py`
- *	`sbv.py`
- *	`sendEmail.py`
- *	`stats.R`
- *	`sum_primes.py`
- *	`test.py`
+|File|Usage|Comments|Runtime, Pre-processing, or Other|
+|---|---|---|---|
+|`.htaccess`|Apache config, associates handlers with filetypes.||Runtime|
+|`catalog.py`||||
+|`convertName2CID.py`||||
+|`drug_sim.R`||||
+|`fileupload.html`||||
+|`generalSearch_test1.py`||||
+|`generalSearch_test2.py`||||
+|`makePairs.R`|||Pre-processing|
+|`odbc6.py`|||Runtime|
+|`pathfinder_m.py`||||
+|`pathfinder_rank1_backup.py`||||
+|`pathfinder_rank2_backup.py`||||
+|`pathfinder_rank3_backup.py`||||
+|`pathfinder_rank5.py`||||
+|`pathfinder_rank_advanced.py`||||
+|`pathfinder_rank_backup.py`||||
+|`pathfinder_rank_backup_R.py`||||
+|`ppDrugTargetPrediction1.py`||||
+|`ppPairPrediction2.py`|||Runtime|
+|`ppPairPrediction_local.py`||||
+|`prediction1.py`||||
+|`prediction2_backup.py`||||
+|`save_file.py`|||Other|
+|`sbv.py`||||
+|`sendEmail.py`|||Other|
+|`stats.R`||||
+|`sum_primes.py`||||
+|`test.py`|||Other|
 
 
 ### Dependencies:

sql/test.sql

@@ -1,4 +1,6 @@
+--
 -- Example queries as needed by odbc6.py.
+--
 SELECT gene_symbol, pref_name
 FROM c2b2r_chembl_08_target_dictionary
 WHERE UPPER(pref_name) = UPPER('Cellular retinoic acid-binding protein I')
@@ -27,7 +29,7 @@ WHERE md5(std_inchi) = md5('InChI=1S/C6H15N/c1-2-3-4-5-6-7/h2-7H2,1H3')
 --
 SELECT *
 FROM  c2b2r_compound_new
-WHERE cid='5591'
+WHERE cid = '5591'
 ;
 --
 SELECT openeye_can_smiles, iupac_name, iupac_traditional_name, inchikey, std_inchi
@@ -43,15 +45,15 @@ WHERE "Name" = 'Histidinemia'
 SELECT "CID"
 FROM c2b2r_chemogenomics
 WHERE TRIM(primary_source) != 'CTD'
-AND med_interested=1
+AND med_interested = 1
 AND "GENE" = 'TUBA1A' limit 10
 ;
 --
 SELECT "GENE"
 FROM c2b2r_chemogenomics
 WHERE TRIM(primary_source) != 'CTD'
-AND med_interested=1
-AND "CID" = '443495'
+AND med_interested = 1
+AND "CID" = '444732'
 ;
 --
 SELECT "CID", "GENE", primary_source
@@ -65,7 +67,7 @@ SELECT "CID", openeye_can_smiles, primary_source
 FROM c2b2r_chemogenomics, c2b2r_compound_new
 WHERE c2b2r_chemogenomics."CID" = c2b2r_compound_new.cid
 AND TRIM(c2b2r_chemogenomics.primary_source) != 'CTD'
-AND c2b2r_chemogenomics.med_interested=1
+AND c2b2r_chemogenomics.med_interested = 1
 AND c2b2r_chemogenomics."GENE" = 'TUBA1A'
 ;
 --