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cellpose-runner

CI codecov docs

Run CellPose with formalized configuration logging and visualization.

Installation

pip install git+https://github.com/JaneliaSciComp/cellpose_runner

Development

This project uses uv and just. To set up a development environment:

git clone https://github.com/JaneliaSciComp/cellpose_runner
cd cellpose_runner
just install

See CONTRIBUTING.md for more, or run just to list all available recipes.