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support zsh #98

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816775d
support zsh
ggaaooppeenngg Mar 26, 2019
e604991
add echo
ggaaooppeenngg Mar 27, 2019
6a42bd0
no zsh
ggaaooppeenngg Mar 27, 2019
88caf5c
update R
ggaaooppeenngg Mar 27, 2019
f91556a
comment out R
ggaaooppeenngg Mar 27, 2019
20c2678
udpate R
ggaaooppeenngg Mar 27, 2019
5d930f6
add channel
ggaaooppeenngg Mar 28, 2019
5d8bf22
update R
ggaaooppeenngg Mar 28, 2019
ef4f631
update r
ggaaooppeenngg Mar 28, 2019
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56 changes: 20 additions & 36 deletions base/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,7 @@ RUN apt-get update && apt-get -yqq dist-upgrade && \
texlive-latex-base \
texlive-latex-extra \
unzip \
zsh \
vim \
&& \
# Setup locales
Expand Down Expand Up @@ -141,42 +142,25 @@ RUN mkdir /etc/julia && \

USER $NB_USER

RUN echo "Install R and R basic packages" && \
conda config --add channels conda-forge && \
conda install -y \
'r-essentials=3.5.1' && \
conda config --add channels ataenzer && \
conda config --add channels jsignell && \
conda config --add channels pjones && \
conda config --add channels omgarcia && \
conda config --add channels cgat && \
conda config --add channels sebp && \
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/ && \
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/ && \
conda install -y \
'r-tm' \
'r-rcolorbrewer' \
'r-nnet' \
'r-nlp' \
'r-ggmap' \
'r-chron' \
'r-rocr' \
'r-arules' \
&& \
echo 'options("repos" = c(CRAN="http://cran.us.r-project.org"))' > ~/.Rprofile && \
R -e "\
install.packages('choroplethr'); \
install.packages('choroplethrMaps'); \
install.packages('Metrics'); \
install.packages('DescTools'); \
install.packages('tools'); \
install.packages('grid'); \
install.packages('WDI'); \
install.packages('wordcloud'); \
install.packages('wordcloud2'); \
install.packages('xgboost'); \
install.packages('plotly');" && \
echo 'options("repos" = c(CRAN="https://mirrors.tuna.tsinghua.edu.cn/CRAN/"))' > ~/.Rprofile && \
# R packages
RUN conda install --yes \
'r-base=3.5.1' \
'r-rodbc=1.3*' \
'unixodbc=2.3.*' \
'r-irkernel=0.8*' \
'r-plyr=1.8*' \
'r-tidyverse=1.2*' \
'r-forecast=8.2*' \
'r-rsqlite=2.1*' \
'r-reshape2=1.4*' \
'r-nycflights13=1.0*' \
'r-caret=6.0*' \
'r-rcurl=1.95*' \
'r-crayon=1.3*' \
'r-randomforest=4.6*' \
'r-htmltools=0.3*' \
'r-htmlwidgets=1.2*' \
'r-hexbin=1.27*' && \
conda clean -tipsy

# Add Julia packages. Only add HDF5 if this is not a test-only build since
Expand Down