DynVision/pyproject.toml at main · Lindsay-Lab/DynVision · GitHub

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[build-system]
requires = ["flit_core >=3.2,<4"]
build-backend = "flit_core.buildapi"

[project]
name = "dynvision"
version = "0.1.0"
description = "Dynamical Vision Modeling"
authors = [{ name = "Robin Gutzen" }]
license = { file = "LICENSE" }
readme = "README.md"
classifiers = [
    "Development Status :: 4 - Beta",
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
    "Natural Language :: English",
    "Operating System :: OS Independent",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
]

# some packages may be better installed via conda on some systems
dependencies = [
    "ruamel.yaml ~=0.18.3",
    "python-dotenv ~=1.0.1",
    "scipy ==1.12",
    "snakemake ~=9.1.5",
    "snakemake-executor-plugin-cluster-generic ~=1.0.0",
    # "pandas ~=1.2.0",
    "scikit-learn >=1.2.0,<2",
    "scikit-image >=0.24.0",  # bumped for Python 3.12 wheel support
    "torch >=2.2.0",
    "torchvision >=0.16.0",
    "torchsummary ~=1.5.0",
    # "opencv-python ~=4.9.0",
    "matplotlib ~=3.5.1",
    "seaborn ~=0.13.0",
    "jupyterlab ~=4.0.0",
    "ipympl ~=0.7.0",
    "tqdm ~=4.66.0",
    "wandb",
    "pytorch-lightning >=2.0.0",
    "tensorboard",
    # "cupy ~= 13.3.0",
    "numba ~= 0.61.0",
    # "cudatoolkit ~= 11.2",
    # "libjpeg-turbo ~= 3.0.0",
    # "libtiff == 4.5.1",
    "pillow == 10.0.0",
    # "opencv ~= 4.10.0",
    # "pkg-config ~= 0.29.2",
    # "ffcv ~= 1.0.2",  # no wheels; needs OpenCV dev files not available on this system
]

[tool]
python_requires = "~= 3.11"

[project.optional-dependencies]
dev = [
    "black>=26.5.1",  # pin to fix; upgrade to latest when bumping
    "bump2version",
    "flake8",
    "pycodestyle",
    "mypy",
    "pre-commit",
    "pydocstyle",
    "pylint",
    "pytest",
    "pytest-cov",
    "pytest-xdist",
]
doc = [
    # MkDocs and theme
    "mkdocs>=1.6.0",
    "mkdocs-material>=9.5.0",
    # MkDocs plugins
    "mkdocstrings[python]>=0.24.0",
    "mkdocs-git-revision-date-localized-plugin>=1.2.0",
    "mkdocs-autorefs>=0.5.0",
    # Versioned documentation deploys (mkdocs.yml -> extra.version.provider: mike)
    "mike>=2.1.0",
    # Markdown extensions
    "pymdown-extensions>=10.0",
    # Optional: for social cards plugin
    # "pillow>=10.0.0",
    # "cairosvg>=2.7.0",
]


[tool.black]
line-length = 87
include = '\.pyi?$'
exclude = '''
/(
    \.git
  | \.venv
)/
'''

[tool.flake8]
ignore = "E203"