CHANGELOG.md

Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Unreleased

0.11.6 - 2019-01-15

Fixed

• Fix HMP single-sample processor.
• Return from sample task body if sample is missing dependencies.
• Strip private analysis result fields correctly.

0.11.5 - 2019-01-15

Changed

• Print more complete information for erros in Sample.fetch_safe() method.

0.11.1 - 2018-11-01

Fixed

• Run test_app CI job for tags so that downstream deploy job can run.

0.11.0 - 2018-11-01

Added

• Docker image tags for commits on develop and major, major.minor, and major.minor.patch semver tags.

Changed

• Use PyTest for testing.
• Moved analysis result and tool results to top level packages.
• Use library_uuid in place of sample_group_uuid for Sample creation.

Fixed

• Middleware endpoint timeout by moving all middleware heavy lifting into task body.
• Fixed how Flask context is passed to Celery task bodies.
• Handle empty abundance/prevalence values gracefully.

0.10.0 - 2018-10-06

Added

• Endpoint to delete sample groups.
• Multi-Axis and Top Taxa fuzz values.

0.9.0 - 2018-05-11

Added

• Basic Docker configuration.
• PostgreSQL Docker and SQLAlchemy configuration.
• Readme documentation about linting.
• Basic test suite and commands.
• 'clean' task to Makefile.
• Production release process and instructions.
• Code coverage for testing.
• Password to users.
• Authentication endpoints and tests.
• CircleCI configuration.

Fixed

• Updated Celery to 4.2.1 to fix module name change on kombu (source).

Changed

• Moved API to blueprint.

0.0.1 - 2017-11-13

Added

• Basic Flask project structure.