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Concern of mapping input genes with EnsDb.Hsapiens.v86 #73

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myushen opened this issue Jul 30, 2024 · 0 comments
Open

Concern of mapping input genes with EnsDb.Hsapiens.v86 #73

myushen opened this issue Jul 30, 2024 · 0 comments

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@myushen
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myushen commented Jul 30, 2024

The EnsDb.Hsapiens.v86 is used in serveral parts of the pipeline for gene mapping. It’s unclear in the pipeline whether the input corresponds to reference hg38 or hg19.
I think that using library(EnsDb.Hsapiens.v86) indicates the hg38 reference genome, while EnsDb.Hsapiens.v75 is used for hg19.
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