diff --git a/tests/functional_tests/python_test_utils/test_inference_regular_pipeline.py b/tests/functional_tests/python_test_utils/test_inference_regular_pipeline.py
index b9c70046a4d..1df21273ee5 100644
--- a/tests/functional_tests/python_test_utils/test_inference_regular_pipeline.py
+++ b/tests/functional_tests/python_test_utils/test_inference_regular_pipeline.py
@@ -1,3 +1,5 @@
+# Copyright (c) 2025 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
+
 import json
 import logging
 import math
@@ -24,9 +26,6 @@ def test_inference_pipeline(golden_values_path: str, test_values_path: str) -> N
         # Handle JSONL output, assume only one line in this case.
         output_current = json.loads(output_current)
 
-    assert set(output_groundtruth.keys()).issuperset(
-        set(output_current.keys())
-    ), f"Some IDs from groundtruth are missing in current: {output_groundtruth.keys()} vs {output_current.keys()}"
     if set(output_groundtruth.keys()) != set(output_current.keys()):
         logger.warning(
             f"Some IDs from groundtruth are missing in output, only the subset of ids in groundtruth will be tested: {output_groundtruth.keys()} vs {output_current.keys()}"
diff --git a/tests/functional_tests/test_cases/moe/gpt_dynamic_inference_tp4_pp1_ep4_16B_logitsmatch/golden_values_dev_dgx_h100.json b/tests/functional_tests/test_cases/moe/gpt_dynamic_inference_tp4_pp1_ep4_16B_logitsmatch/golden_values_dev_dgx_h100.json
index 711eeddfb25..aaa789b3696 100644
--- a/tests/functional_tests/test_cases/moe/gpt_dynamic_inference_tp4_pp1_ep4_16B_logitsmatch/golden_values_dev_dgx_h100.json
+++ b/tests/functional_tests/test_cases/moe/gpt_dynamic_inference_tp4_pp1_ep4_16B_logitsmatch/golden_values_dev_dgx_h100.json
@@ -156,6 +156,5 @@
    -1.2342015504837036,
    -0.5394397377967834
   ]
- },
- "throughput": 6.543502517233578
+ }
 }
\ No newline at end of file
diff --git a/tests/functional_tests/test_cases/moe/gpt_dynamic_inference_tp4_pp1_ep4_16B_logitsmatch/model_config.yaml b/tests/functional_tests/test_cases/moe/gpt_dynamic_inference_tp4_pp1_ep4_16B_logitsmatch/model_config.yaml
index 1b9eaaf1f65..669ff9532ad 100644
--- a/tests/functional_tests/test_cases/moe/gpt_dynamic_inference_tp4_pp1_ep4_16B_logitsmatch/model_config.yaml
+++ b/tests/functional_tests/test_cases/moe/gpt_dynamic_inference_tp4_pp1_ep4_16B_logitsmatch/model_config.yaml
@@ -75,7 +75,7 @@ MODEL_ARGS:
   --output-path: ${TENSORBOARD_PATH}
   --prompts: "Time travel to 2008, and go to a bar or a club or one of the myriad disco-basements on the Lower East Side that does not quite know which of those it is. Dance awkwardly in a room full of other glittered-up nerds, and wait for something to happen, buoyed on the feeling that this is the big swollen heart of life, that this is New York like the movies."
   --incoming-requests-per-sec: -1 # all requests arrive up front.
-  --inference-repeat-n: 8
+  --inference-repeat-n: 1
 METRICS:
   - "generated_tokens"
   - "logprobs"