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Q: Phosphoproteomics data #2

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kaupuks opened this issue Mar 24, 2024 · 3 comments
Open

Q: Phosphoproteomics data #2

kaupuks opened this issue Mar 24, 2024 · 3 comments
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documentation Improvements or additions to documentation

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@kaupuks
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kaupuks commented Mar 24, 2024

Do you have an example (tutorial) how to analyze LFQ phosphoproteomics data?
@hsiaoyi0504
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@kaupuks We currently don't have one, but if you have any recommended data, I maybe could create one.

@kaupuks
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kaupuks commented Apr 2, 2024

I have my own data processed using the FragPipe 21.1 LFQ-Phospho workflow. Twelve samples (six healthy tissue, six pancreatic cancer), about 2500 phosphosites. Maybe it would be suitable for demonstration purposes?

@hsiaoyi0504
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@kaupuks It's definitely suited. Do you want to contact me through email for the follow-up? Or I am preparing some tutorials for the LFQ-Phospho analysis. It might take a little longer. I am also not sure if that's a public available data?

@hsiaoyi0504 hsiaoyi0504 mentioned this issue Apr 21, 2024
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@hsiaoyi0504 hsiaoyi0504 added the documentation Improvements or additions to documentation label May 8, 2024
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@hsiaoyi0504 @kaupuks