FDR ISSUE

[kwynne71]

Hi Fengchao,
Hope you are well. I had an error see below, Do you suggest changing the fdr from 0.01 to 0.05 in the "fdr filter and report"section of the "validation tab" and if so is this okay.

ERRO[21:06:13] the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter
Process 'PhilosopherFilter' finished, exit code: 2
Process returned non-zero exit code, stopping

[AimeeD90]

Can you share the whole log file with us? Just want to know how many initial identifications before applying FDR filtering.

[kwynne71]

log_2023-09-24_20-19-02.txt <https://drive.google.com/file/d/1oLomE4NAW9wxK5RGOGgraAkUYpPxhAgz/view?usp=drive_web> Hi Yamei, Here you go. Best Kieran

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On Mon, 25 Sept 2023 at 19:40, Yamei Deng ***@***.***> wrote: Can you share the whole log file with us? Just want to know how many initial identifications before applying FDR filtering. — Reply to this email directly, view it on GitHub <#464 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AUPV2DX3TIRDDHJ2UAYLYQLX4HFYHANCNFSM6AAAAAA5DLZZ34> . You are receiving this because you authored the thread.Message ID: ***@***.***>