Philosopher 1.4.5

Added

• Mising clevel parameter on the pipeline configuration file.

Fixed

• A small typo was prventing the execution of TMT-Integrator with the pipeline.

Snapcrat

• snap install philosopher

Docker images

• docker pull prvst/philosopher:1.4.5
• docker pull prvst/philosopher:latest

Philosopher 1.4.4

Added

• TMT-Integrator was added to the pipeline command.
• InterProphet is now used to create combined peptide lists.
• New TMT-Integrator parameter.

Changed

• Updated pipeline configuration file.
• Repeated tags were removed from the pipeline cparamgter file.

Fixed

• Minor bug fixes.
• Misassignment between abacus command and filter during the pipeline processing.

Docker images

• docker pull prvst/philosopher:1.4.4
• docker pull prvst/philosopher:latest

Snapcrat

• snap install philosopher

Philosopher 1.2.3

Added

• Added documentation for MSFragger parameters.

Fixed

• Missing isolated parameter added to yaml file.
• Missing MSFragger parameters.

Docker images

• docker pull prvst/philosopher:1.2.3
• docker pull prvst/philosopher:latest

Snapcrat

• snap install philosopher

Philosopher 1.2.2

Changed

• Updated the TPP tools to the latest snapshot version.

Docker images

• docker pull prvst/philosopher:1.2.2
• docker pull prvst/philosopher:latest

Snapcrat

• snap install philosopher

Philosopher 1.1.2

Added

• Semantic versioning checking. Warnings will be pushed to major and minor changes only.

Changed

• Temporary folders are now purged with workspace --clean command.

Fixed

• Minor bug fixes and code improvements.
• Ion report header was showing repeated column names.

Docker images

• docker pull prvst/philosopher:1.1.2
• docker pull prvst/philosopher:latest

Snapcrat

• snap install philosopher

Philosopher 1.0.1

Changed

• Updating from time-based versioning to sematic-based

Docker images

• docker pull prvst/philosopher:1.0.1
• docker pull prvst/philosopher:latest

Snapcrat

• snap install philosopher

Philosopher 1.0.0

Added

• Database search parameters are now collected from pep.xml files.
• mzID output is now available.
• Peptide combined reports now have intensities.

Changed

• The mapmods flag is deprecated. The flag will still be available and the mapping will ocurr for all analysis.
• idconvert and mscovnert are temporarily disabled for all platforms.
• Updated Golang to 1.12.5
• The filter command now operates aproximately 4 times faster.
• Database files names now indicate if they have isoforms and reviewed sequences.

Docker images

• docker pull prvst/philosopher:1.0.0
• docker pull prvst/philosopher:latest