Files

 main

/

man

/

Copy path

Directory actions

More options

Directory actions

More options

Latest commit

r-trimbour

update doc

Sep 4, 2023

fef46a6 · Sep 4, 2023

History

History

This branch is 1 commit ahead of, 109 commits behind cantinilab/HuMMuS:main.

/

man

/

Top

Folders and files

Name		Name	Last commit message	Last commit date
parent directory ..
figures		figures	update style, mostly ' ' --> ""	Jun 20, 2023
add_network.Rd		add_network.Rd	update for _pkgdown	Jun 7, 2023
aggregate_matrix.Rd		aggregate_matrix.Rd	hummus_object adding and fucntion updated for it	Apr 9, 2023
bipartite-class.Rd		bipartite-class.Rd	update of the doc	Jun 2, 2023
bipartite_peaks2genes.Rd		bipartite_peaks2genes.Rd	update of the doc	Jun 2, 2023
bipartite_tfs2peaks.Rd		bipartite_tfs2peaks.Rd	update of the doc	Jun 2, 2023
compute_atac_peak_network.Rd		compute_atac_peak_network.Rd	update of the doc	Jun 2, 2023
compute_gene_network.Rd		compute_gene_network.Rd	update of the doc	Jun 2, 2023
compute_tf_network.Rd		compute_tf_network.Rd	update doc	Sep 4, 2023
dMcast.Rd		dMcast.Rd	update of the doc	Jun 2, 2023
define_binding_regions.Rd		define_binding_regions.Rd	update of the doc	Jun 2, 2023
define_enhancers.Rd		define_enhancers.Rd	update of the doc	Jun 2, 2023
define_general_config.Rd		define_general_config.Rd	update doc	Sep 4, 2023
define_grn.Rd		define_grn.Rd	update of the doc	Jun 2, 2023
define_output.Rd		define_output.Rd	update doc	Sep 4, 2023
define_target_genes.Rd		define_target_genes.Rd	update of the doc	Jun 2, 2023
fast_aggregate.Rd		fast_aggregate.Rd	update of the doc	Jun 2, 2023
find_peaks_near_genes.Rd		find_peaks_near_genes.Rd	store_network more general	May 16, 2023
format_bipartites_names.Rd		format_bipartites_names.Rd	update of the doc	Jun 2, 2023
format_multiplex_names.Rd		format_multiplex_names.Rd	update of the doc	Jun 2, 2023
get_genome_annotations.Rd		get_genome_annotations.Rd	update description depencies and doc	Apr 3, 2023
get_tf2motifs.Rd		get_tf2motifs.Rd	hummus_object adding and fucntion updated for it	Apr 9, 2023
get_tfs.Rd		get_tfs.Rd	update of the doc	Jun 2, 2023
hummus_object-class.Rd		hummus_object-class.Rd	correct doctsring hummus_object	Jun 20, 2023
motifs_db-class.Rd		motifs_db-class.Rd	update of the doc	Jun 2, 2023
multilayer-class.Rd		multilayer-class.Rd	update of the doc	Jun 2, 2023
multiplex-class.Rd		multiplex-class.Rd	update of the doc	Jun 2, 2023
peaks_in_regulatory_elements.Rd		peaks_in_regulatory_elements.Rd	store_network more general	May 16, 2023
run_cicero_wrapper.Rd		run_cicero_wrapper.Rd	update for _pkgdown	Jun 7, 2023
save_multilayer.Rd		save_multilayer.Rd	update for _pkgdown	Jun 7, 2023
store_network.Rd		store_network.Rd	update for _pkgdown	Jun 7, 2023
View all files