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Ignoring full download cell files #61

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7ac61f3
Ignoring full download cell files
pgleeson Aug 13, 2024
c9b69e1
Update Python version matrix in CI workflow
pgleeson Nov 12, 2025
d0607df
Upgrade setuptools for compatibility with Neuron
pgleeson Nov 14, 2025
a42cc27
Change Python version from 3.12 to 3.11
pgleeson Nov 14, 2025
3046628
Also test latest Neuron versions
pgleeson Nov 25, 2025
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5 changes: 3 additions & 2 deletions .github/workflows/omv-ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@ jobs:
strategy:
fail-fast: false
matrix:
python-version: [ 3.8, 3.9 ]
engine: ["NEURON:8.1", "PyNEURON:8.1", "jNeuroML", "jNeuroML_NEURON", "jNeuroML_NetPyNE", "jNeuroML_validate"]
python-version: [ 3.9, 3.11 ] # allensdk doesn't work with py 3.12...
engine: ["NEURON", "PyNEURON", "NEURON:8.1", "PyNEURON:8.1", "jNeuroML", "jNeuroML_NEURON", "jNeuroML_NetPyNE", "jNeuroML_validate"]


steps:
Expand All @@ -29,6 +29,7 @@ jobs:
run: |
pip install git+https://github.com/OpenSourceBrain/osb-model-validation
pip install scipy sympy matplotlib cython pandas tables
pip install setuptools --upgrade # needed for Neuron on py 3.12

- name: Download selected NEURON models
if: ${{ contains( matrix.engine, 'NEURON' ) }}
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85 changes: 85 additions & 0 deletions .gitignore
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Expand Up @@ -486,3 +486,88 @@ arm64
/CellTypesDatabase/models/NeuroML2/489932597.net.nml
/CellTypesDatabase/models/NeuroML2/491517388.net.nml
/CellTypesDatabase/models/NeuroML2/496930338.net.nml

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