Error in getREF

[u-n-i-v-e-r-z]

Hi there,

There has been changes in BSgenome library.
getREF function no longer works even if genomes are indeed available.

The issue comes from this line :

BSgenome::installed.genomes(splitNameParts=TRUE)$provider_version

That should now be :

BSgenome::installed.genomes(splitNameParts=TRUE)$genome

Best

[RobTesf]

I keep getting the same error with the latest version. It would be nice to have this line fixed with the suggestion.
line 93 of helper_functions.R

        GENOMES <- BSgenome::installed.genomes(
            splitNameParts=TRUE)$provider_version

thanks