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roaringarray.go
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roaringarray.go
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package roaring
import (
"bytes"
"encoding/binary"
"errors"
"fmt"
"io"
"github.com/RoaringBitmap/roaring/v2/internal"
)
type container interface {
// addOffset returns the (low, high) parts of the shifted container.
// Whenever one of them would be empty, nil will be returned instead to
// avoid unnecessary allocations.
addOffset(uint16) (container, container)
clone() container
and(container) container
andCardinality(container) int
iand(container) container // i stands for inplace
andNot(container) container
iandNot(container) container // i stands for inplace
isEmpty() bool
getCardinality() int
// rank returns the number of integers that are
// smaller or equal to x. rank(infinity) would be getCardinality().
rank(uint16) int
iadd(x uint16) bool // inplace, returns true if x was new.
iaddReturnMinimized(uint16) container // may change return type to minimize storage.
iaddRange(start, endx int) container // i stands for inplace, range is [firstOfRange,endx)
iremove(x uint16) bool // inplace, returns true if x was present.
iremoveReturnMinimized(uint16) container // may change return type to minimize storage.
not(start, final int) container // range is [firstOfRange,lastOfRange)
inot(firstOfRange, endx int) container // i stands for inplace, range is [firstOfRange,endx)
xor(r container) container
getShortIterator() shortPeekable
iterate(cb func(x uint16) bool) bool
getReverseIterator() shortIterable
getManyIterator() manyIterable
contains(i uint16) bool
maximum() uint16
minimum() uint16
// equals is now logical equals; it does not require the
// same underlying container types, but compares across
// any of the implementations.
equals(r container) bool
fillLeastSignificant16bits(array []uint32, i int, mask uint32) int
or(r container) container
orCardinality(r container) int
isFull() bool
ior(r container) container // i stands for inplace
intersects(r container) bool // whether the two containers intersect
lazyOR(r container) container
lazyIOR(r container) container
getSizeInBytes() int
iremoveRange(start, final int) container // i stands for inplace, range is [firstOfRange,lastOfRange)
selectInt(x uint16) int // selectInt returns the xth integer in the container
serializedSizeInBytes() int
writeTo(io.Writer) (int, error)
numberOfRuns() int
toEfficientContainer() container
String() string
containerType() contype
safeMinimum() (uint16, error)
safeMaximum() (uint16, error)
nextValue(x uint16) int
previousValue(x uint16) int
nextAbsentValue(x uint16) int
previousAbsentValue(x uint16) int
validate() error
}
type contype uint8
const (
bitmapContype contype = iota
arrayContype
run16Contype
run32Contype
)
var (
ErrEmptyKeys = errors.New("keys were empty")
ErrKeySortOrder = errors.New("keys were out of order")
ErrCardinalityConstraint = errors.New("size of arrays was not coherent")
)
// careful: range is [firstOfRange,lastOfRange]
func rangeOfOnes(start, last int) container {
if start > MaxUint16 {
panic("rangeOfOnes called with start > MaxUint16")
}
if last > MaxUint16 {
panic("rangeOfOnes called with last > MaxUint16")
}
if start < 0 {
panic("rangeOfOnes called with start < 0")
}
if last < 0 {
panic("rangeOfOnes called with last < 0")
}
return newRunContainer16Range(uint16(start), uint16(last))
}
type roaringArray struct {
keys []uint16
containers []container `msg:"-"` // don't try to serialize directly.
needCopyOnWrite []bool
copyOnWrite bool
}
func newRoaringArray() *roaringArray {
return &roaringArray{}
}
// runOptimize compresses the element containers to minimize space consumed.
// Q: how does this interact with copyOnWrite and needCopyOnWrite?
// A: since we aren't changing the logical content, just the representation,
//
// we don't bother to check the needCopyOnWrite bits. We replace
// (possibly all) elements of ra.containers in-place with space
// optimized versions.
func (ra *roaringArray) runOptimize() {
for i := range ra.containers {
ra.containers[i] = ra.containers[i].toEfficientContainer()
}
}
func (ra *roaringArray) appendContainer(key uint16, value container, mustCopyOnWrite bool) {
ra.keys = append(ra.keys, key)
ra.containers = append(ra.containers, value)
ra.needCopyOnWrite = append(ra.needCopyOnWrite, mustCopyOnWrite)
}
func (ra *roaringArray) appendWithoutCopy(sa roaringArray, startingindex int) {
mustCopyOnWrite := sa.needCopyOnWrite[startingindex]
ra.appendContainer(sa.keys[startingindex], sa.containers[startingindex], mustCopyOnWrite)
}
func (ra *roaringArray) appendCopy(sa roaringArray, startingindex int) {
// cow only if the two request it, or if we already have a lightweight copy
copyonwrite := (ra.copyOnWrite && sa.copyOnWrite) || sa.needsCopyOnWrite(startingindex)
if !copyonwrite {
// since there is no copy-on-write, we need to clone the container (this is important)
ra.appendContainer(sa.keys[startingindex], sa.containers[startingindex].clone(), copyonwrite)
} else {
ra.appendContainer(sa.keys[startingindex], sa.containers[startingindex], copyonwrite)
if !sa.needsCopyOnWrite(startingindex) {
sa.setNeedsCopyOnWrite(startingindex)
}
}
}
func (ra *roaringArray) appendWithoutCopyMany(sa roaringArray, startingindex, end int) {
for i := startingindex; i < end; i++ {
ra.appendWithoutCopy(sa, i)
}
}
func (ra *roaringArray) appendCopyMany(sa roaringArray, startingindex, end int) {
for i := startingindex; i < end; i++ {
ra.appendCopy(sa, i)
}
}
func (ra *roaringArray) appendCopiesUntil(sa roaringArray, stoppingKey uint16) {
// cow only if the two request it, or if we already have a lightweight copy
copyonwrite := ra.copyOnWrite && sa.copyOnWrite
for i := 0; i < sa.size(); i++ {
if sa.keys[i] >= stoppingKey {
break
}
thiscopyonewrite := copyonwrite || sa.needsCopyOnWrite(i)
if thiscopyonewrite {
ra.appendContainer(sa.keys[i], sa.containers[i], thiscopyonewrite)
if !sa.needsCopyOnWrite(i) {
sa.setNeedsCopyOnWrite(i)
}
} else {
// since there is no copy-on-write, we need to clone the container (this is important)
ra.appendContainer(sa.keys[i], sa.containers[i].clone(), thiscopyonewrite)
}
}
}
func (ra *roaringArray) appendCopiesAfter(sa roaringArray, beforeStart uint16) {
// cow only if the two request it, or if we already have a lightweight copy
copyonwrite := ra.copyOnWrite && sa.copyOnWrite
startLocation := sa.getIndex(beforeStart)
if startLocation >= 0 {
startLocation++
} else {
startLocation = -startLocation - 1
}
for i := startLocation; i < sa.size(); i++ {
thiscopyonewrite := copyonwrite || sa.needsCopyOnWrite(i)
if thiscopyonewrite {
ra.appendContainer(sa.keys[i], sa.containers[i], thiscopyonewrite)
if !sa.needsCopyOnWrite(i) {
sa.setNeedsCopyOnWrite(i)
}
} else {
// since there is no copy-on-write, we need to clone the container (this is important)
ra.appendContainer(sa.keys[i], sa.containers[i].clone(), thiscopyonewrite)
}
}
}
func (ra *roaringArray) removeIndexRange(begin, end int) {
if end <= begin {
return
}
r := end - begin
copy(ra.keys[begin:], ra.keys[end:])
copy(ra.containers[begin:], ra.containers[end:])
copy(ra.needCopyOnWrite[begin:], ra.needCopyOnWrite[end:])
ra.resize(len(ra.keys) - r)
}
func (ra *roaringArray) resize(newsize int) {
for k := newsize; k < len(ra.containers); k++ {
ra.containers[k] = nil
}
ra.keys = ra.keys[:newsize]
ra.containers = ra.containers[:newsize]
ra.needCopyOnWrite = ra.needCopyOnWrite[:newsize]
}
func (ra *roaringArray) clear() {
ra.resize(0)
ra.copyOnWrite = false
}
func (ra *roaringArray) clone() *roaringArray {
sa := roaringArray{}
sa.copyOnWrite = ra.copyOnWrite
// this is where copyOnWrite is used.
if ra.copyOnWrite {
sa.keys = make([]uint16, len(ra.keys))
copy(sa.keys, ra.keys)
sa.containers = make([]container, len(ra.containers))
copy(sa.containers, ra.containers)
sa.needCopyOnWrite = make([]bool, len(ra.needCopyOnWrite))
ra.markAllAsNeedingCopyOnWrite()
sa.markAllAsNeedingCopyOnWrite()
// sa.needCopyOnWrite is shared
} else {
// make a full copy
sa.keys = make([]uint16, len(ra.keys))
copy(sa.keys, ra.keys)
sa.containers = make([]container, len(ra.containers))
for i := range sa.containers {
sa.containers[i] = ra.containers[i].clone()
}
sa.needCopyOnWrite = make([]bool, len(ra.needCopyOnWrite))
}
return &sa
}
// clone all containers which have needCopyOnWrite set to true
// This can be used to make sure it is safe to munmap a []byte
// that the roaring array may still have a reference to.
func (ra *roaringArray) cloneCopyOnWriteContainers() {
for i, needCopyOnWrite := range ra.needCopyOnWrite {
if needCopyOnWrite {
ra.containers[i] = ra.containers[i].clone()
ra.needCopyOnWrite[i] = false
}
}
}
// unused function:
//func (ra *roaringArray) containsKey(x uint16) bool {
// return (ra.binarySearch(0, int64(len(ra.keys)), x) >= 0)
//}
// getContainer returns the container with key `x`
// if no such container exists `nil` is returned
func (ra *roaringArray) getContainer(x uint16) container {
i := ra.binarySearch(0, int64(len(ra.keys)), x)
if i < 0 {
return nil
}
return ra.containers[i]
}
func (ra *roaringArray) getContainerAtIndex(i int) container {
return ra.containers[i]
}
func (ra *roaringArray) getFastContainerAtIndex(i int, needsWriteable bool) container {
c := ra.getContainerAtIndex(i)
switch t := c.(type) {
case *arrayContainer:
c = t.toBitmapContainer()
case *runContainer16:
if !t.isFull() {
c = t.toBitmapContainer()
}
case *bitmapContainer:
if needsWriteable && ra.needCopyOnWrite[i] {
c = ra.containers[i].clone()
}
}
return c
}
// getUnionedWritableContainer switches behavior for in-place Or
// depending on whether the container requires a copy on write.
// If it does using the non-inplace or() method leads to fewer allocations.
func (ra *roaringArray) getUnionedWritableContainer(pos int, other container) container {
if ra.needCopyOnWrite[pos] {
return ra.getContainerAtIndex(pos).or(other)
}
return ra.getContainerAtIndex(pos).ior(other)
}
func (ra *roaringArray) getWritableContainerAtIndex(i int) container {
if ra.needCopyOnWrite[i] {
ra.containers[i] = ra.containers[i].clone()
ra.needCopyOnWrite[i] = false
}
return ra.containers[i]
}
// getIndex returns the index of the container with key `x`
// if no such container exists a negative value is returned
func (ra *roaringArray) getIndex(x uint16) int {
// Todo : test
// before the binary search, we optimize for frequent cases
size := len(ra.keys)
if (size == 0) || (ra.keys[size-1] == x) {
return size - 1
}
return ra.binarySearch(0, int64(size), x)
}
func (ra *roaringArray) getKeyAtIndex(i int) uint16 {
return ra.keys[i]
}
func (ra *roaringArray) insertNewKeyValueAt(i int, key uint16, value container) {
ra.keys = append(ra.keys, 0)
ra.containers = append(ra.containers, nil)
copy(ra.keys[i+1:], ra.keys[i:])
copy(ra.containers[i+1:], ra.containers[i:])
ra.keys[i] = key
ra.containers[i] = value
ra.needCopyOnWrite = append(ra.needCopyOnWrite, false)
copy(ra.needCopyOnWrite[i+1:], ra.needCopyOnWrite[i:])
ra.needCopyOnWrite[i] = false
}
func (ra *roaringArray) remove(key uint16) bool {
i := ra.binarySearch(0, int64(len(ra.keys)), key)
if i >= 0 { // if a new key
ra.removeAtIndex(i)
return true
}
return false
}
func (ra *roaringArray) removeAtIndex(i int) {
copy(ra.keys[i:], ra.keys[i+1:])
copy(ra.containers[i:], ra.containers[i+1:])
copy(ra.needCopyOnWrite[i:], ra.needCopyOnWrite[i+1:])
ra.resize(len(ra.keys) - 1)
}
func (ra *roaringArray) setContainerAtIndex(i int, c container) {
ra.containers[i] = c
}
func (ra *roaringArray) replaceKeyAndContainerAtIndex(i int, key uint16, c container, mustCopyOnWrite bool) {
ra.keys[i] = key
ra.containers[i] = c
ra.needCopyOnWrite[i] = mustCopyOnWrite
}
func (ra *roaringArray) size() int {
return len(ra.keys)
}
// binarySearch returns the index of the key.
// negative value returned if not found
func (ra *roaringArray) binarySearch(begin, end int64, ikey uint16) int {
// TODO: add unit tests
low := begin
high := end - 1
for low+16 <= high {
middleIndex := low + (high-low)/2 // avoid overflow
middleValue := ra.keys[middleIndex]
if middleValue < ikey {
low = middleIndex + 1
} else if middleValue > ikey {
high = middleIndex - 1
} else {
return int(middleIndex)
}
}
for ; low <= high; low++ {
val := ra.keys[low]
if val >= ikey {
if val == ikey {
return int(low)
}
break
}
}
return -int(low + 1)
}
func (ra *roaringArray) equals(o interface{}) bool {
srb, ok := o.(roaringArray)
if ok {
if srb.size() != ra.size() {
return false
}
for i, k := range ra.keys {
if k != srb.keys[i] {
return false
}
}
for i, c := range ra.containers {
if !c.equals(srb.containers[i]) {
return false
}
}
return true
}
return false
}
func (ra *roaringArray) headerSize() uint64 {
size := uint64(len(ra.keys))
if ra.hasRunCompression() {
if size < noOffsetThreshold { // for small bitmaps, we omit the offsets
return 4 + (size+7)/8 + 4*size
}
return 4 + (size+7)/8 + 8*size // - 4 because we pack the size with the cookie
}
return 4 + 4 + 8*size
}
// should be dirt cheap
func (ra *roaringArray) serializedSizeInBytes() uint64 {
answer := ra.headerSize()
for _, c := range ra.containers {
answer += uint64(c.serializedSizeInBytes())
}
return answer
}
// spec: https://github.com/RoaringBitmap/RoaringFormatSpec
func (ra *roaringArray) writeTo(w io.Writer) (n int64, err error) {
hasRun := ra.hasRunCompression()
isRunSizeInBytes := 0
cookieSize := 8
if hasRun {
cookieSize = 4
isRunSizeInBytes = (len(ra.keys) + 7) / 8
}
descriptiveHeaderSize := 4 * len(ra.keys)
preambleSize := cookieSize + isRunSizeInBytes + descriptiveHeaderSize
buf := make([]byte, preambleSize+4*len(ra.keys))
nw := 0
if hasRun {
binary.LittleEndian.PutUint16(buf[0:], uint16(serialCookie))
nw += 2
binary.LittleEndian.PutUint16(buf[2:], uint16(len(ra.keys)-1))
nw += 2
// compute isRun bitmap without temporary allocation
runbitmapslice := buf[nw : nw+isRunSizeInBytes]
for i, c := range ra.containers {
switch c.(type) {
case *runContainer16:
runbitmapslice[i/8] |= 1 << (uint(i) % 8)
}
}
nw += isRunSizeInBytes
} else {
binary.LittleEndian.PutUint32(buf[0:], uint32(serialCookieNoRunContainer))
nw += 4
binary.LittleEndian.PutUint32(buf[4:], uint32(len(ra.keys)))
nw += 4
}
// descriptive header
for i, key := range ra.keys {
binary.LittleEndian.PutUint16(buf[nw:], key)
nw += 2
c := ra.containers[i]
binary.LittleEndian.PutUint16(buf[nw:], uint16(c.getCardinality()-1))
nw += 2
}
startOffset := int64(preambleSize + 4*len(ra.keys))
if !hasRun || (len(ra.keys) >= noOffsetThreshold) {
// offset header
for _, c := range ra.containers {
binary.LittleEndian.PutUint32(buf[nw:], uint32(startOffset))
nw += 4
switch rc := c.(type) {
case *runContainer16:
startOffset += 2 + int64(len(rc.iv))*4
default:
startOffset += int64(getSizeInBytesFromCardinality(c.getCardinality()))
}
}
}
written, err := w.Write(buf[:nw])
if err != nil {
return n, err
}
n += int64(written)
for _, c := range ra.containers {
written, err := c.writeTo(w)
if err != nil {
return n, err
}
n += int64(written)
}
return n, nil
}
// spec: https://github.com/RoaringBitmap/RoaringFormatSpec
func (ra *roaringArray) toBytes() ([]byte, error) {
var buf bytes.Buffer
_, err := ra.writeTo(&buf)
return buf.Bytes(), err
}
// Reads a serialized roaringArray from a byte slice.
func (ra *roaringArray) readFrom(stream internal.ByteInput, cookieHeader ...byte) (int64, error) {
var cookie uint32
var err error
if len(cookieHeader) > 0 && len(cookieHeader) != 4 {
return int64(len(cookieHeader)), fmt.Errorf("error in roaringArray.readFrom: could not read initial cookie: incorrect size of cookie header")
}
if len(cookieHeader) == 4 {
cookie = binary.LittleEndian.Uint32(cookieHeader)
} else {
cookie, err = stream.ReadUInt32()
if err != nil {
return stream.GetReadBytes(), fmt.Errorf("error in roaringArray.readFrom: could not read initial cookie: %s", err)
}
}
// If NextReturnsSafeSlice is false, then willNeedCopyOnWrite should be true
willNeedCopyOnWrite := !stream.NextReturnsSafeSlice()
var size uint32
var isRunBitmap []byte
if cookie&0x0000FFFF == serialCookie {
size = uint32(cookie>>16 + 1)
// create is-run-container bitmap
isRunBitmapSize := (int(size) + 7) / 8
isRunBitmap, err = stream.Next(isRunBitmapSize)
if err != nil {
return stream.GetReadBytes(), fmt.Errorf("malformed bitmap, failed to read is-run bitmap, got: %s", err)
}
} else if cookie == serialCookieNoRunContainer {
size, err = stream.ReadUInt32()
if err != nil {
return stream.GetReadBytes(), fmt.Errorf("malformed bitmap, failed to read a bitmap size: %s", err)
}
} else {
return stream.GetReadBytes(), fmt.Errorf("error in roaringArray.readFrom: did not find expected serialCookie in header")
}
if size > (1 << 16) {
return stream.GetReadBytes(), fmt.Errorf("it is logically impossible to have more than (1<<16) containers")
}
// descriptive header
buf, err := stream.Next(2 * 2 * int(size))
if err != nil {
return stream.GetReadBytes(), fmt.Errorf("failed to read descriptive header: %s", err)
}
keycard := byteSliceAsUint16Slice(buf)
if isRunBitmap == nil || size >= noOffsetThreshold {
if err := stream.SkipBytes(int(size) * 4); err != nil {
return stream.GetReadBytes(), fmt.Errorf("failed to skip bytes: %s", err)
}
}
// Allocate slices upfront as number of containers is known
if cap(ra.containers) >= int(size) {
ra.containers = ra.containers[:size]
} else {
ra.containers = make([]container, size)
}
if cap(ra.keys) >= int(size) {
ra.keys = ra.keys[:size]
} else {
ra.keys = make([]uint16, size)
}
if cap(ra.needCopyOnWrite) >= int(size) {
ra.needCopyOnWrite = ra.needCopyOnWrite[:size]
} else {
ra.needCopyOnWrite = make([]bool, size)
}
for i := uint32(0); i < size; i++ {
key := keycard[2*i]
card := int(keycard[2*i+1]) + 1
ra.keys[i] = key
ra.needCopyOnWrite[i] = willNeedCopyOnWrite
if isRunBitmap != nil && isRunBitmap[i/8]&(1<<(i%8)) != 0 {
// run container
nr, err := stream.ReadUInt16()
if err != nil {
return 0, fmt.Errorf("failed to read runtime container size: %s", err)
}
buf, err := stream.Next(int(nr) * 4)
if err != nil {
return stream.GetReadBytes(), fmt.Errorf("failed to read runtime container content: %s", err)
}
nb := runContainer16{
iv: byteSliceAsInterval16Slice(buf),
}
ra.containers[i] = &nb
} else if card > arrayDefaultMaxSize {
// bitmap container
buf, err := stream.Next(arrayDefaultMaxSize * 2)
if err != nil {
return stream.GetReadBytes(), fmt.Errorf("failed to read bitmap container: %s", err)
}
nb := bitmapContainer{
cardinality: card,
bitmap: byteSliceAsUint64Slice(buf),
}
ra.containers[i] = &nb
} else {
// array container
buf, err := stream.Next(card * 2)
if err != nil {
return stream.GetReadBytes(), fmt.Errorf("failed to read array container: %s", err)
}
nb := arrayContainer{
byteSliceAsUint16Slice(buf),
}
ra.containers[i] = &nb
}
}
return stream.GetReadBytes(), nil
}
func (ra *roaringArray) hasRunCompression() bool {
for _, c := range ra.containers {
switch c.(type) {
case *runContainer16:
return true
}
}
return false
}
/**
* Find the smallest integer index larger than pos such that array[index].key>=min. If none can
* be found, return size. Based on code by O. Kaser.
*
* @param min minimal value
* @param pos index to exceed
* @return the smallest index greater than pos such that array[index].key is at least as large as
* min, or size if it is not possible.
*/
func (ra *roaringArray) advanceUntil(min uint16, pos int) int {
lower := pos + 1
if lower >= len(ra.keys) || ra.keys[lower] >= min {
return lower
}
spansize := 1
for lower+spansize < len(ra.keys) && ra.keys[lower+spansize] < min {
spansize *= 2
}
var upper int
if lower+spansize < len(ra.keys) {
upper = lower + spansize
} else {
upper = len(ra.keys) - 1
}
if ra.keys[upper] == min {
return upper
}
if ra.keys[upper] < min {
// means
// array
// has no
// item
// >= min
// pos = array.length;
return len(ra.keys)
}
// we know that the next-smallest span was too small
lower += (spansize >> 1)
mid := 0
for lower+1 != upper {
mid = (lower + upper) >> 1
if ra.keys[mid] == min {
return mid
} else if ra.keys[mid] < min {
lower = mid
} else {
upper = mid
}
}
return upper
}
func (ra *roaringArray) markAllAsNeedingCopyOnWrite() {
for i := range ra.needCopyOnWrite {
ra.needCopyOnWrite[i] = true
}
}
func (ra *roaringArray) needsCopyOnWrite(i int) bool {
return ra.needCopyOnWrite[i]
}
func (ra *roaringArray) setNeedsCopyOnWrite(i int) {
ra.needCopyOnWrite[i] = true
}
func (ra *roaringArray) checkKeysSorted() bool {
if len(ra.keys) == 0 || len(ra.keys) == 1 {
return true
}
previous := ra.keys[0]
for nextIdx := 1; nextIdx < len(ra.keys); nextIdx++ {
next := ra.keys[nextIdx]
if previous >= next {
return false
}
previous = next
}
return true
}
// validate checks the referential integrity
// ensures len(keys) == len(containers), recurses and checks each container type
func (ra *roaringArray) validate() error {
if len(ra.keys) == 0 {
return ErrEmptyKeys
}
if !ra.checkKeysSorted() {
return ErrKeySortOrder
}
if len(ra.keys) != len(ra.containers) {
return ErrCardinalityConstraint
}
if len(ra.keys) != len(ra.needCopyOnWrite) {
return ErrCardinalityConstraint
}
for _, container := range ra.containers {
err := container.validate()
if err != nil {
return err
}
}
return nil
}