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Compound names wrongly parsed #12

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daheym opened this issue Sep 17, 2024 · 0 comments
Open

Compound names wrongly parsed #12

daheym opened this issue Sep 17, 2024 · 0 comments

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@daheym
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daheym commented Sep 17, 2024

First of all thanks a lot for your work!

I observed that parsing the BRENDA txt file (version 2023) and checking for compounds, e.g. with EC number 5.6.2.2 (the one I checked first) returns shortened compound names.

Example: "6-methoxy-4-" where it should be 6-methoxy-4-(2-[4-[([1,3]oxathiolo[5
4-c]pyridin-6-ylmethyl)amino]piperidin-1-yl]ethyl)quinoline-3
carbonitrile
or simply "4-" (could be one of many).

The shortening seems to take place when '(' is encountered within the compound name. I tried to trace the processing through the functions but it is very complicated due to the consecutive functions with regular expressions.

Could you take a look? Thanks in advance

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