npm hosted/vendored compatibility

Fix PDM settings ignoring PDM's config layers (#609, #566) #561

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Run time

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Job	Run time
build	2m 52s
install-proof (7.24.2, 16.20.2)	2m 49s
install-proof (10.9.9, 22.22.2)	2m 48s
install-proof (7.0.0, 16.20.2)	25s
install-proof (11.20.0, 24.11.1)	2m 40s
install-proof (9.0.0, 18.20.8)	2m 56s
install-proof (8.19.4, 16.20.2)	2m 49s
install-proof (12.1.0, 24.15.0)	2m 54s
install-proof (9.9.4, 18.20.8)	2m 48s
install-proof (6.14.18, 16.20.2)	32s
install-proof (12.0.0, 24.15.0)	2m 43s
	26m 16s