DVSC-Model-Builder/known_cell_types.py at master · TuragaLab/DVSC-Model-Builder · GitHub

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cells = []

cells.append('R1')
cells.append('R2')
cells.append('R3')
cells.append('R4')
cells.append('R5')
cells.append('R6')
cells.append('R7')
cells.append('R8')

cells.append('L1')
cells.append('L2')
cells.append('L3')
cells.append('L4')
cells.append('L5')

cells.append('Lawf1')
cells.append('Lawf2')

cells.append('Am')

cells.append('CT1')

cells.append('C2')
cells.append('C3')

cells.append('Mt7')
cells.append('Mt8')

cells.append('Mi1')
cells.append('Mi2')
cells.append('Mi3')
cells.append('Mi4')
cells.append('Mi9')
cells.append('Mi10')
cells.append('Mi11')
cells.append('Mi12')
cells.append('Mi13')
cells.append('Mi14')
cells.append('Mi15')
cells.append('Mi16')
cells.append('Mi18')

cells.append('Tm1')
cells.append('Tm2')
cells.append('Tm3')
cells.append('Tm4')
cells.append('Tm5a')
cells.append('Tm5b')
cells.append('Tm5c')
cells.append('Tm5d')
cells.append('Tm5Y')
cells.append('Tm6')
cells.append('Tm8')
cells.append('Tm9')
cells.append('Tm16')
cells.append('Tm20')
cells.append('Tm22')
cells.append('Tm23')
cells.append('Tm25')
cells.append('Tm28')
cells.append('Tm30')
cells.append('Tm31')

cells.append('TmY3')
cells.append('TmY4')
cells.append('TmY5a')
cells.append('TmY9')
cells.append('TmY10')
cells.append('TmY13')
cells.append('TmY14')
cells.append('TmY15')
cells.append('TmY17')

cells.append('Pm1')
cells.append('Pm1a')
cells.append('Pm1b')
cells.append('Pm2')
cells.append('Pm3')
cells.append('Pm4')
cells.append('Pm5')

cells.append('Dm1')
cells.append('Dm2')
cells.append('Dm3')
cells.append('Dm4')
cells.append('Dm5')
cells.append('Dm6')
cells.append('Dm7')
cells.append('Dm8')
cells.append('Dm9')
cells.append('Dm10')
cells.append('Dm11')
cells.append('Dm12')
cells.append('Dm13')
cells.append('Dm14')
cells.append('Dm15')
cells.append('Dm16')
cells.append('Dm17')
cells.append('Dm18')
cells.append('Dm19')
cells.append('Dm20')

cells.append('T1')
cells.append('T2')
cells.append('T2a')
cells.append('T3')

cells.append('T4a')
cells.append('T4b')
cells.append('T4c')
cells.append('T4d')

cells.append('T5a')
cells.append('T5b')
cells.append('T5c')
cells.append('T5d')

# Cells with an alias instead of their real name that have to be converted to their real name
cell_alias = dict()
cell_alias['TmY16?'] = 'TmY16'
cell_alias['Tm4?'] = 'Tm4'
cell_alias['TmY17?'] = 'TmY17'
cell_alias['Dm10??'] = 'Dm10'

# Cells that have an unsure type and need to be remapped to a set of possible cells
cell_remap = dict()
cell_remap['Tm6/14'] = ['Tm6', 'Tm14']
cell_remap['Tm23/24'] = ['Tm23', 'Tm24']
cell_remap['Tm25/Y1'] = ['Tm25', 'TmY1']
cell_remap['Tm28/TmY9'] = ['Tm28', 'TmY9']
cell_remap['Pm5/Mt5'] = ['Pm5', 'Mt5']
cell_remap['Pm5/Mt5'] = ['Pm5', 'Mt5']
cell_remap['Tm3'] = ['Tm3-ant', 'Tm3-post']
cell_remap['Tm4'] = ['Tm4-ant', 'Tm4-post']

# Some cells come in anterior/posterior pairs, which we interpret as two different cell types
cell_modifiers = dict()
cell_modifiers['ant'] = '-ant'
cell_modifiers['post'] = '-post'


# Cells currently excluded from the model
cell_prune = []
for i in range(0, 25):
    # Remove all Pm cells
    cell_prune.append('Pm'+str(i))
    cell_prune.append('Pm'+str(i)+'a')
    cell_prune.append('Pm'+str(i)+'b')
    # Remove all Dm cells
    cell_prune.append('Dm'+str(i))
    # Remove all Mt cells
    cell_prune.append('Mt'+str(i))