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Create unit tests for HTPP feature data fit with tcplfit2 #38

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sedavid01 opened this issue Sep 12, 2023 · 1 comment
Open
3 tasks

Create unit tests for HTPP feature data fit with tcplfit2 #38

sedavid01 opened this issue Sep 12, 2023 · 1 comment

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@sedavid01
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Goal: The goal of this issue is to create unit tests for high-phenotypic profiling (HTPP) data such that we ensure that as the codebase of tcplfit2 is updated that the updates do not break/alter the results previously obtained in previous analyses with tcplfit2.

Needs for finishing this ticket:

  • Choose a manageable subset of the overall data provided by the HTTR team - verify the chosen set covers many (if not all) scenarios of interest
  • Create an RData file for the package (may want to ensure we do NOT want this to be exported from the package)
  • Create a unit test ensuring that the results for HTTR remain consistent from version to version of tcplfit2
@sedavid01 sedavid01 changed the title Create unit tests for HTPP data fit with tcplfit2 Create unit tests for HTPP feature data fit with tcplfit2 Oct 11, 2023
@sedavid01
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Update on dropped doses for HTPP data:

  • Write a brief explanatory comment about the dropped doses
  • Verify you are dropping the appropriate doses and number of doses for the respective chemicals
    (Note, suggesting to do the dropping the unit test code not in the data prep R script.)

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