installation errors #1
Description
unable to install the library in R (Version 4.3.3 on my Windows 10) by the code below.
devtools::install_github("https://github.com/USEPA/CompTox-httrpathway")
Downloading GitHub repo USEPA/CompTox-httrpathway@HEAD
Skipping 1 packages not available: GSVA
── R CMD build ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file 'C:\Users...\AppData\Local\Temp\Rtmp8Ujldq\remotes2c1c6bb751bf\USEPA-CompTox-httrpathway-df2712c/DESCRIPTION' (2.4s)
─ preparing 'httrpathway':
✔ checking DESCRIPTION meta-information
Warning: driver.Rd:49: unknown macro '\item'
Warning: driver.Rd:51: unknown macro '\item'
Warning: driver.Rd:53: unknown macro '\item'
Warning: driver.Rd:55: unknown macro '\item'
Warning: driver.Rd:57: unknown macro '\item'
Warning: driver.Rd:59: unknown macro '\item'
Warning: driver.Rd:61: unknown macro '\item'
Warning: driver.Rd:63: unknown macro '\item'
Warning: driver.Rd:65: unknown macro '\item'
Warning: driver.Rd:67: unknown macro '\item'
Warning: driver.Rd:69: unknown macro '\item'
Warning: driver.Rd:93: unknown macro '\item'
Warning: driver.Rd:95: unknown macro '\item'
Warning: driver.Rd:97: unexpected section header '\description'
Warning: driver.Rd:100: unexpected END_OF_INPUT '
'
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
Removed empty directory 'httrpathway/httrpl'
NB: this package now depends on R (>= 3.5.0)
WARNING: Added dependency on R >= 3.5.0 because serialized objects in
serialize/load version 3 cannot be read in older versions of R.
File(s) containing such objects:
'httrpathway/data/signatureDB.RData'
'httrpathway/data/signatureDB_genelists.RData'
─ building 'httrpathway_1.1.0.tar.gz'
Installing package into ‘C:/Users/.../AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
- installing source package 'httrpathway' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called '*'
Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: lazy loading failed for package 'httrpathway' - removing 'C:/Users/.../AppData/Local/R/win-library/4.3/httrpathway'
Warning message:
In i.p(...) :
installation of package ‘C:/Users/.../AppData/Local/Temp/Rtmp8Ujldq/file2c1cd0075e1/httrpathway_1.1.0.tar.gz’ had non-zero exit status