remove trailing whitespace, ensure newline@eof

simonLeary42 · simonLeary42 · commit 2a0a7376475e · 2025-09-09T16:19:49.000-04:00
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -7,11 +7,11 @@ exclude: |
 
 repos:
   # auto formatters (no work required) #############################################################
-  # - repo: https://github.com/pre-commit/pre-commit-hooks
-  #   rev: v5.0.0
-  #   hooks:
-  #     - id: trailing-whitespace
-  #     - id: end-of-file-fixer
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
   - repo: local
     hooks:
       - id: phpcbf
diff --git a/README.md b/README.md
@@ -1,7 +1,7 @@
 ![UNITY](https://user-images.githubusercontent.com/40907639/137608695-2d914da2-1ecc-480b-a47e-a9e33b2b1b45.png)
 
 # Unity Web Portal
-Unity Web Portal is a PHP application built in top of MariaDB and LDAP which acts as a central user portal for high-performance-computing clusters. 
+Unity Web Portal is a PHP application built in top of MariaDB and LDAP which acts as a central user portal for high-performance-computing clusters.
 
 Basic Features:
    * User signs up
@@ -113,7 +113,7 @@ rm "$prod" && ln -s "$old" "$prod"
        ADD `firstname` VARCHAR(768) NOT NULL AFTER `timestamp`,
        ADD `lastname` VARCHAR(768) NOT NULL AFTER `firstname`,
        ADD `email` VARCHAR(768) NOT NULL AFTER `lastname`,
-       ADD `org` VARCHAR(768) NOT NULL AFTER `email`; 
+       ADD `org` VARCHAR(768) NOT NULL AFTER `email`;
        ```
 
 ### 1.1 -> 1.2
diff --git a/deployment/config/README.md b/deployment/config/README.md
@@ -2,4 +2,4 @@
 
 In this folder only one file can be created at this time: `config.ini`.
 
-In this file you can override any of the config from the default file in `defaults/config.ini.default`. **Every deployment needs this**
+In this file you can override any of the config from the default file in `defaults/config.ini.default`. **Every deployment needs this**
diff --git a/deployment/custom_user_mappings/README.md b/deployment/custom_user_mappings/README.md
@@ -2,4 +2,4 @@ Put any csv in this folder in the format:
 
 <netid>,<user id>
 
-and the website will auto assign that id (assuming it is available) when that user applies for an account.
+and the website will auto assign that id (assuming it is available) when that user applies for an account.
diff --git a/deployment/mail_overrides/README.md b/deployment/mail_overrides/README.md
@@ -1,3 +1,3 @@
 # Mail Overrides
 
-In this location, you can copy any file in the resources/mail folder into here and modify it. **The filename must remain the same**
+In this location, you can copy any file in the resources/mail folder into here and modify it. **The filename must remain the same**
diff --git a/deployment/overrides/README.md b/deployment/overrides/README.md
@@ -10,4 +10,4 @@ For example, if the primary virtual host is `example.com`, but you wanted to hos
         config.ini
 ```
 
-Everything else in the deployment folder cannot be overridden.
+Everything else in the deployment folder cannot be overridden.
diff --git a/resources/mail/account_deletion_request_admin.php b/resources/mail/account_deletion_request_admin.php
@@ -14,4 +14,4 @@
     <strong>Name</strong> <?php echo $data["name"]; ?>
     <br>
     <strong>Email</strong> <?php echo $data["email"]; ?>
-</p>
+</p>
diff --git a/resources/mail/footer.php b/resources/mail/footer.php
@@ -1,6 +1,6 @@
 <footer style="text-align: center; font-size: 8pt; color: #aaaaaa; border-top: 1px solid #dddddd; padding-top: 10px;">
-    <span>You are receiving this email because you have an account 
-        on the <a target='_blank' href='<?php echo $this->MSG_LINKREF; ?>'>Unity Cluster</a>. 
-        If you would like to stop receiving these emails, 
+    <span>You are receiving this email because you have an account
+        on the <a target='_blank' href='<?php echo $this->MSG_LINKREF; ?>'>Unity Cluster</a>.
+        If you would like to stop receiving these emails,
         you may request to close your account by replying to this email.</span>
 </footer>
diff --git a/resources/mail/group_created.php b/resources/mail/group_created.php
@@ -6,7 +6,7 @@
 
 <p>Hello,</p>
 
-<p>Your request for a PI account on the Unity cluster has been approved. You can access the management 
+<p>Your request for a PI account on the Unity cluster has been approved. You can access the management
     page for your group <a href="<?php echo $this->MSG_LINKREF; ?>/panel/pi.php">on this page</a>.</p>
 
-<p>Do not hesitate to reply if you have any questions!</p>
+<p>Do not hesitate to reply if you have any questions!</p>
diff --git a/resources/mail/group_denied.php b/resources/mail/group_denied.php
@@ -6,13 +6,13 @@
 
 <p>Hello,</p>
 
-<p>Unfortunately, your request for a PI account on the Unity cluster has not been approved. 
+<p>Unfortunately, your request for a PI account on the Unity cluster has not been approved.
     Usually, this is due to one of the following reasons:</p>
 
 <ul>
     <li>You are not a PI at your organization</li>
     <li>We were not able to verify your PI status. In this case please reply with verification</li>
-    <li>Your organization has not been authorized on the Unity Cluster. 
+    <li>Your organization has not been authorized on the Unity Cluster.
         In this case please reply with more information about your request</li>
 </ul>
 
diff --git a/resources/mail/group_disband.php b/resources/mail/group_disband.php
@@ -6,7 +6,7 @@
 
 <p>Hello,</p>
 
-<p>Your PI group, <?php echo $data["group_name"] ?>, has been disbanded on the Unity 
+<p>Your PI group, <?php echo $data["group_name"] ?>, has been disbanded on the Unity
 cluster. Any jobs associated with this PI account have been killed.</p>
 
-<p>If you believe this to be a mistake, please reply to this email</p>
+<p>If you believe this to be a mistake, please reply to this email</p>
diff --git a/resources/mail/group_request.php b/resources/mail/group_request.php
@@ -6,7 +6,7 @@
 
 <p>Hello,</p>
 
-<p>You have requested a PI account on the Unity Cluster. 
+<p>You have requested a PI account on the Unity Cluster.
     The admin team is reviewing this request, and you will receive an email soon with more details.</p>
 
-<p>Do not hesitate to reply if you have any questions!</p>
+<p>Do not hesitate to reply if you have any questions!</p>
diff --git a/resources/mail/group_request_admin.php b/resources/mail/group_request_admin.php
@@ -18,4 +18,4 @@
     <strong>Email</strong> <?php echo $data["email"]; ?>
 </p>
 
-<p>You can approve this account <a href="<?php echo $this->MSG_LINKREF; ?>/admin/pi-mgmt.php">here</a>.</p>
+<p>You can approve this account <a href="<?php echo $this->MSG_LINKREF; ?>/admin/pi-mgmt.php">here</a>.</p>
diff --git a/resources/mail/group_user_added.php b/resources/mail/group_user_added.php
@@ -6,8 +6,8 @@
 
 <p>Hello,</p>
 
-<p>You have been approved to join the PI group <?php echo $data["group"]; ?>. 
-Navigate to the <a href="<?php echo $this->MSG_LINKREF; ?>/panel/groups.php">my groups</a> 
+<p>You have been approved to join the PI group <?php echo $data["group"]; ?>.
+Navigate to the <a href="<?php echo $this->MSG_LINKREF; ?>/panel/groups.php">my groups</a>
 page to see your PI groups.</p>
 
-<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
+<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
diff --git a/resources/mail/group_user_added_owner.php b/resources/mail/group_user_added_owner.php
@@ -18,4 +18,4 @@
 <strong>Email</strong> <?php echo $data["email"]; ?>
 </p>
 
-<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
+<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
diff --git a/resources/mail/group_user_denied.php b/resources/mail/group_user_denied.php
@@ -8,4 +8,4 @@
 
 <p>You have been denied from joining the PI group <?php echo $data["group"]; ?>.</p>
 
-<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
+<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
diff --git a/resources/mail/group_user_denied_owner.php b/resources/mail/group_user_denied_owner.php
@@ -6,7 +6,7 @@
 
 <p>Hello,</p>
 
-<p>A user has been denied from joining your PI group, <?php echo $data["group"]; ?>. 
+<p>A user has been denied from joining your PI group, <?php echo $data["group"]; ?>.
 The details of the denied user are below:</p>
 
 <p>
@@ -19,4 +19,4 @@
 <strong>Email</strong> <?php echo $data["email"]; ?>
 </p>
 
-<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
+<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
diff --git a/resources/mail/group_user_removed.php b/resources/mail/group_user_removed.php
@@ -8,4 +8,4 @@
 
 <p>You have been removed from the PI group <?php echo $data["group"]; ?>.</p>
 
-<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
+<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
diff --git a/resources/mail/group_user_removed_owner.php b/resources/mail/group_user_removed_owner.php
@@ -18,4 +18,4 @@
 <strong>Email</strong> <?php echo $data["email"]; ?>
 </p>
 
-<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
+<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
diff --git a/resources/mail/group_user_request.php b/resources/mail/group_user_request.php
@@ -8,4 +8,4 @@
 
 <p>You have requested to join the group <?php echo $data["group"]; ?>.</p>
 
-<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
+<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
diff --git a/resources/mail/group_user_request_owner.php b/resources/mail/group_user_request_owner.php
@@ -18,5 +18,5 @@
 <strong>Email</strong> <?php echo $data["email"]; ?>
 </p>
 
-<p>You can approve or deny this user on the 
-    <a href="<?php echo $this->MSG_LINKREF; ?>/panel/pi.php">my users</a> page</p>
+<p>You can approve or deny this user on the
+    <a href="<?php echo $this->MSG_LINKREF; ?>/panel/pi.php">my users</a> page</p>
diff --git a/resources/mail/user_created.php b/resources/mail/user_created.php
@@ -14,8 +14,8 @@
 <strong>Organization</strong> <?php echo $data["org"]; ?>
 </p>
 
-<p>Please login to the web portal to access Unity. 
-    If you need console access, you will need to set your SSH keys in the 
+<p>Please login to the web portal to access Unity.
+    If you need console access, you will need to set your SSH keys in the
     <a href="<?php echo $this->MSG_LINKREF; ?>/panel/account.php">account settings</a> page.</p>
 
-<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
+<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
diff --git a/resources/mail/user_loginshell.php b/resources/mail/user_loginshell.php
@@ -6,8 +6,8 @@
 
 <p>Hello,</p>
 
-<p>You have updated your login shell on the Unity cluster to <?php echo $data["new_shell"]; ?>. 
-You can view the login shell settings on the 
+<p>You have updated your login shell on the Unity cluster to <?php echo $data["new_shell"]; ?>.
+You can view the login shell settings on the
 <a href="<?php echo $this->MSG_LINKREF; ?>/panel/account.php">account settings</a> page</p>
 
-<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
+<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
diff --git a/resources/mail/user_sshkey.php b/resources/mail/user_sshkey.php
@@ -14,7 +14,7 @@
 }
 ?>
 
-<p>You can view the SSH public keys attached to your account on 
+<p>You can view the SSH public keys attached to your account on
     the <a href="<?php echo $this->MSG_LINKREF; ?>/panel/account.php">account settings</a> page.</p>
 
-<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
+<p>If you believe this to be a mistake, please reply to this email as soon as possible.</p>
diff --git a/resources/templates/footer.php b/resources/templates/footer.php
@@ -10,7 +10,7 @@
     for ($i = 0; $i < count($footer_logos); $i++) {
         echo
         "<a target='_blank' href='" . $footer_links[$i] . "'>
-        <img src='" . $CONFIG["site"]["prefix"] . "/assets/" . $footer_logos[$i] . "' 
+        <img src='" . $CONFIG["site"]["prefix"] . "/assets/" . $footer_logos[$i] . "'
         draggable='false' title='" . $footer_titles[$i] . "'></a>";
     }
     ?>
diff --git a/resources/templates/header.php b/resources/templates/header.php
@@ -60,7 +60,7 @@
 <body>
 
   <header>
-    <img id="imgLogo" draggable=false 
+    <img id="imgLogo" draggable=false
     src="<?php echo $CONFIG["site"]["prefix"]; ?>/assets/<?php echo $CONFIG["site"]["logo"]; ?>">
     <button class="hamburger vertical-align">
       <img draggable="false" src="<?php echo $CONFIG["site"]["prefix"]; ?>/assets/menu.png" alt="Menu Button">
diff --git a/tools/docker-dev/identity/ldap-config.ldif b/tools/docker-dev/identity/ldap-config.ldif
@@ -18,4 +18,4 @@ add: olcAccess
 olcAccess: {1}to * by * read
 -
 add: olcSizeLimit
-olcSizeLimit: unlimited
+olcSizeLimit: unlimited
diff --git a/tools/docker-dev/identity/phpldapadmin-apache.conf b/tools/docker-dev/identity/phpldapadmin-apache.conf
@@ -3,4 +3,4 @@
 	ServerName identity
 	DocumentRoot /usr/share/phpldapadmin/htdocs
 
-</VirtualHost>
+</VirtualHost>
diff --git a/tools/docker-dev/identity/ssh.ldif b/tools/docker-dev/identity/ssh.ldif
@@ -8,4 +8,4 @@ olcAttributeTypes: ( 1.3.6.1.4.1.24552.500.1.1.1.13 NAME 'sshPublicKey'
 olcObjectClasses: ( 1.3.6.1.4.1.24552.500.1.1.2.0 NAME 'ldapPublicKey' SUP top AUXILIARY
     DESC 'MANDATORY: OpenSSH LPK objectclass'
     MAY ( sshPublicKey $ uid )
-    )
+    )
diff --git a/tools/docker-dev/sql/phpmyadmin-apache.conf b/tools/docker-dev/sql/phpmyadmin-apache.conf
@@ -22,4 +22,4 @@
         Require all denied
     </Directory>
 
-</VirtualHost>
+</VirtualHost>
diff --git a/tools/docker-dev/web/unity-apache.conf b/tools/docker-dev/web/unity-apache.conf
@@ -24,4 +24,4 @@
         SetEnv mail "DevName@DevDomain.com"
     </Location>
 
-</VirtualHost>
+</VirtualHost>
diff --git a/webroot/css/filters.css b/webroot/css/filters.css
@@ -12,4 +12,4 @@
 
 .key td:hover {
     cursor: pointer;
-}
+}
diff --git a/webroot/css/modal.css b/webroot/css/modal.css
@@ -64,4 +64,4 @@ div.modalBody>* {
 .buttonList>* {
     display: inline-block;
     margin-right: 10px;
-}
+}
diff --git a/webroot/js/filter.js b/webroot/js/filter.js
@@ -87,4 +87,4 @@ function filterRows() {
         }
         );
     }
-}
+}
diff --git a/webroot/js/sort.js b/webroot/js/sort.js
@@ -62,12 +62,12 @@ window.onload = function() {
         var sortElement = document.getElementById(sort);
         if (sortElement) {
             if (order == "asc") {
-                sortElement.click();   
+                sortElement.click();
             } else if (order == "desc") {
                 sortElement.click();
                 sortElement.click();
             }
         }
     }
     filterRows();
-}
+}

Original file line number	Diff line number	Diff line change
`@@ -2,4 +2,4 @@`
`2`	`2`
`3`	`3`	In this folder only one file can be created at this time: `config.ini`.
`4`	`4`
`5`		-In this file you can override any of the config from the default file in `defaults/config.ini.default`. Every deployment needs this
	`5`	+In this file you can override any of the config from the default file in `defaults/config.ini.default`. Every deployment needs this
Original file line number	Diff line number	Diff line change
`@@ -2,4 +2,4 @@ Put any csv in this folder in the format:`
`2`	`2`
`3`	`3`	`<netid>,<user id>`
`4`	`4`
`5`		`-and the website will auto assign that id (assuming it is available) when that user applies for an account.`
	`5`	`+and the website will auto assign that id (assuming it is available) when that user applies for an account.`
Original file line number	Diff line number	Diff line change
`@@ -1,3 +1,3 @@`
`1`	`1`	`# Mail Overrides`
`2`	`2`
`3`		`-In this location, you can copy any file in the resources/mail folder into here and modify it. The filename must remain the same`
	`3`	`+In this location, you can copy any file in the resources/mail folder into here and modify it. The filename must remain the same`