From 7a841337820649c7dcbc94c74e3b914f88ca06ef Mon Sep 17 00:00:00 2001 From: Paul Wilkinson Date: Wed, 26 Mar 2025 10:38:21 -0400 Subject: [PATCH] Fixed SQL for postgres in java code for Community annotations from Apollo track --- .../service/services/jbrowse/JBrowseFeatureDataFactory.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Service/src/main/java/org/apidb/apicommon/service/services/jbrowse/JBrowseFeatureDataFactory.java b/Service/src/main/java/org/apidb/apicommon/service/services/jbrowse/JBrowseFeatureDataFactory.java index 08222654b..cb216be1c 100644 --- a/Service/src/main/java/org/apidb/apicommon/service/services/jbrowse/JBrowseFeatureDataFactory.java +++ b/Service/src/main/java/org/apidb/apicommon/service/services/jbrowse/JBrowseFeatureDataFactory.java @@ -235,9 +235,9 @@ private StreamingOutput getFeaturesOutput(String featureSql, String bulkSubfeatu String sortedSubfeatureSql = " select * from (" + " select a.*," + - " (case when b.parent_id is null then to_char(a.parent_id) else to_char(b.parent_id) end) as top_parent_id" + + " (case when b.parent_id is null then a.parent_id else b.parent_id end) as top_parent_id" + " from " + wrappedSubfeatureSql + " a" + - " left join " + wrappedSubfeatureSql + " b on to_char(a.parent_id) = to_char(b.feature_id)" + + " left join " + wrappedSubfeatureSql + " b on a.parent_id = b.feature_id" + " )" + " order by top_parent_id asc"; @@ -458,7 +458,7 @@ private static void appendAttributes(JSONObject json, ResultSet rs) throws SQLEx private Optional> findFeatureRange(String featureSql, String queryName) { // find range of selected features - String rangeSql = "select min(startm) as min_start, max(end) as max_end from ( " + featureSql + " )"; + String rangeSql = "select min(startm) as min_start, max(\"end\") as max_end from ( " + featureSql + " )"; return new SQLRunner(_appDs, rangeSql, queryName).executeQuery(rs -> { if (!rs.next()) return Optional.empty(); int minStart = rs.getInt("min_start");