scipush/config.example.toml at main · VidsHidden/scipush · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
[profile]
name = "你的名字"
stage = "细胞生物学研0"
lab_website = "https://www.ismsz.cn/Web/KXYJKYTDPage?Id=20&PageId=14124"
timezone = "Asia/Shanghai"

[search]
# PubMed will return papers from the last N days.
days_back = 7
max_results = 80
language = "english"

# Starter query for a cell-biology student in a systems-medicine group.
# Edit this as your project direction becomes clearer.
pubmed_query = """
(
  cell biology[Title/Abstract]
  OR cellular mechanism[Title/Abstract]
  OR organelle[Title/Abstract]
  OR autophagy[Title/Abstract]
  OR lysosome[Title/Abstract]
  OR mitochondria[Title/Abstract]
  OR cell death[Title/Abstract]
  OR immune cell[Title/Abstract]
  OR inflammation[Title/Abstract]
  OR single-cell[Title/Abstract]
  OR spatial transcriptomics[Title/Abstract]
  OR systems immunology[Title/Abstract]
)
AND (
  mechanism[Title/Abstract]
  OR signaling[Title/Abstract]
  OR disease[Title/Abstract]
  OR therapy[Title/Abstract]
  OR biomarker[Title/Abstract]
)
"""

[ranking]
# Higher weight means papers with these terms are pushed upward.
must_have = [
  "cell biology",
  "mechanism",
  "signaling",
  "immune",
  "inflammation",
  "single-cell",
  "spatial transcriptomics",
]

nice_to_have = [
  "autophagy",
  "lysosome",
  "mitochondria",
  "organelle",
  "cell death",
  "tumor microenvironment",
  "systems biology",
  "bioinformatics",
]

avoid = [
  "protocol only",
  "case report",
  "conference abstract",
]

[report]
top_n = 12
output_dir = "reports"
database_path = "data/literature_push.sqlite3"

[email]
enabled = false
smtp_host = "smtp.example.com"
smtp_port = 587
username = "your_email@example.com"
password_env = "LIT_PUSH_EMAIL_PASSWORD"
from_addr = "your_email@example.com"
to_addrs = ["your_email@example.com"]
subject_prefix = "[文献推送]"