Enhance the password hashing with pepper function. Significantly increases complexity to crack passwords (according to NIST and other researchers), with a few extra lines to the doPasswordEncode and doCheckPassword functions and install procedure (create pepper in config.php?).
Additionally, on the doCheckPassword function there is a method for updating the older MD5 passwords, but also should take into account he PHP hash updates that will eventually arrive. See password_needs_rehash for details.