finished abnormally, OS return value: -11

[AmaliT]

Description of bug

Hi

I am unsure whats causing the error here - there is plenty of memory available etc. Are you able to advise?

Thanks in advance

== Error == system call for: "['/software/SPAdes/4.0.0/bin/spades-core', '/powerplant/workspace/hraaxt/bioinf_metaomicsPlantMicrobiome/MMicro_biogeography/Metagenome/MetaAssemblies/work/46/c6019e5f4af238c1d7f2d734a9c652/K33/configs/config.info', '/powerplant/workspace/hraaxt/bioinf_metaomicsPlantMicrobiome/MMicro_biogeography/Metagenome/MetaAssemblies/work/46/c6019e5f4af238c1d7f2d734a9c652/K33/configs/mda_mode.info', '/powerplant/workspace/hraaxt/bioinf_metaomicsPlantMicrobiome/MMicro_biogeography/Metagenome/MetaAssemblies/work/46/c6019e5f4af238c1d7f2d734a9c652/K33/configs/meta_mode.info']" finished abnormally, OS return value: -11

spades.log

spades11.log

params.txt

params.txt

SPAdes version

SPAdes/4.0.0

Operating System

Linux-5.14.0-427.37.1.el9_4.x86_64-x86_64-with-glibc2.34

Python Version

3.9.21

Method of SPAdes installation

manual

No errors reported in spades.log

• Yes

[AmaliT]

Hi, following up to see if you could advise me on what might be causing the issue. I have tried conda env and reinstalling spades as well. Just with a set of samples this error appears (quiet a complex metagenome samples). Any advice would be much appreciated.