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1 parent 2d34ebd commit d85a5c5Copy full SHA for d85a5c5
.github/workflows/pkgdown.yaml
@@ -35,7 +35,7 @@ jobs:
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run: sudo apt-get install ncbi-blast+
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- name: Install R packages not in DESCRIPTION
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- run: Rscript -e 'pak::pkg_install(c("datawizard", "formattable", "ggforce", "ggtree", "gtExtras", "MicrobiotaProcess", "pillar", "pointblank", "summarytools", "svglite", "tidytree", "treeio"))'
+ run: Rscript -e 'pak::pkg_install(c("datawizard", "formattable", "ggplot2", "ComplexUpset", "ggforce", "ggtree", "gtExtras", "MicrobiotaProcess", "pillar", "pointblank", "summarytools", "svglite", "tidytree", "treeio"), ask = FALSE, upgrade=TRUE)'
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- name: Build site
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run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE, clean = TRUE)
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