diff --git a/.claude/launch.json b/.claude/launch.json
index bbcc96b..4e60b37 100644
--- a/.claude/launch.json
+++ b/.claude/launch.json
@@ -2,9 +2,9 @@
   "version": "0.0.1",
   "configurations": [
     {
-      "name": "cc-manager-v1",
+      "name": "cc-manager",
       "runtimeExecutable": "node",
-      "runtimeArgs": ["v1/dist/index.js", "--repo", ".", "--workers", "5", "--port", "8080"],
+      "runtimeArgs": ["dist/index.js", "--repo", ".", "--workers", "5", "--port", "8080"],
       "port": 8080
     }
   ]
diff --git a/.githooks/pre-commit b/.githooks/pre-commit
index 265b9dd..9257951 100755
--- a/.githooks/pre-commit
+++ b/.githooks/pre-commit
@@ -1,13 +1,13 @@
 #!/usr/bin/env bash
 set -euo pipefail
 
-# Only run checks when v1/ files are staged
-if ! git diff --cached --name-only | grep -q '^v1/'; then
+# Only run checks when src/ files are staged
+if ! git diff --cached --name-only | grep -q '^src/'; then
   exit 0
 fi
 
 echo "pre-commit: type checking..."
-cd v1 && npx tsc --noEmit
+npx tsc --noEmit
 
 echo "pre-commit: running tests..."
 # Clear GIT_DIR/GIT_INDEX_FILE so tests that create temp git repos work correctly
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index a362ed3..064fd3c 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -20,16 +20,16 @@ jobs:
         with:
           node-version: ${{ matrix.node-version }}
           cache: npm
-          cache-dependency-path: v1/package-lock.json
+          cache-dependency-path: package-lock.json
 
       - name: Install dependencies
-        run: cd v1 && npm ci
+        run: npm ci
 
       - name: Type check
-        run: cd v1 && npx tsc --noEmit
+        run: npx tsc --noEmit
 
       - name: Build
-        run: cd v1 && npm run build
+        run: npm run build
 
       - name: Test
-        run: cd v1 && npm test
+        run: npm test
diff --git a/.github/workflows/pages.yml b/.github/workflows/pages.yml
index ed1ba84..a130818 100644
--- a/.github/workflows/pages.yml
+++ b/.github/workflows/pages.yml
@@ -31,7 +31,7 @@ jobs:
       - name: Upload artifact
         uses: actions/upload-pages-artifact@v3
         with:
-          path: docs
+          path: docs/site
 
   deploy:
     needs: build
diff --git a/v1/.npmignore b/.npmignore
similarity index 100%
rename from v1/.npmignore
rename to .npmignore
diff --git a/CLAUDE.md b/CLAUDE.md
index 872a2fb..9f5d218 100644
--- a/CLAUDE.md
+++ b/CLAUDE.md
@@ -4,16 +4,16 @@
 Multi-agent orchestrator that runs parallel Claude Code agents in git worktrees. Tasks submitted via REST API, monitored via SSE, agents auto-commit and merge to main.
 
 ## Architecture
-- **v1/src/index.ts** — CLI entry point (Commander.js)
-- **v1/src/server.ts** — Hono REST API + SSE
-- **v1/src/scheduler.ts** — Task queue, priority dispatch, retry logic, stale worker recovery
-- **v1/src/agent-runner.ts** — Multi-agent CLI spawning (Claude, Codex, generic), cost tracking, code review
+- **src/index.ts** — CLI entry point (Commander.js)
+- **src/server.ts** — Hono REST API + SSE
+- **src/scheduler.ts** — Task queue, priority dispatch, retry logic, stale worker recovery
+- **src/agent-runner.ts** — Multi-agent CLI spawning (Claude, Codex, generic), cost tracking, code review
   - Hybrid architecture: Claude Agent SDK (`claude-sdk`) for programmatic control + CLI spawning for all agents
-- **v1/src/worktree-pool.ts** — Git worktree lifecycle, parallel init, merge
-- **v1/src/store.ts** — SQLite persistence (better-sqlite3, WAL mode)
-- **v1/src/types.ts** — Shared TypeScript types
-- **v1/src/logger.ts** — Structured JSON logger
-- **v1/src/web/index.html** — Dashboard (vanilla HTML/JS, dark theme)
+- **src/worktree-pool.ts** — Git worktree lifecycle, parallel init, merge
+- **src/store.ts** — SQLite persistence (better-sqlite3, WAL mode)
+- **src/types.ts** — Shared TypeScript types
+- **src/logger.ts** — Structured JSON logger
+- **src/web/index.html** — Dashboard (vanilla HTML/JS, dark theme)
 
 ## Tech Stack
 - TypeScript 5 / Node.js ESM
@@ -24,13 +24,13 @@ Multi-agent orchestrator that runs parallel Claude Code agents in git worktrees.
 
 ## Build, Test & Run
 ```bash
-cd v1 && npx tsc && cp src/web/index.html dist/web/index.html
+npx tsc && cp src/web/index.html dist/web/index.html
 node dist/index.js --repo /path/to/repo --workers 5 --port 8080
 ```
 
 ```bash
 # Run tests (217 tests across 5 suites)
-cd v1 && node --import tsx --test src/__tests__/*.test.ts
+node --import tsx --test src/__tests__/*.test.ts
 ```
 
 ## Development Rules
@@ -134,11 +134,11 @@ pending → running → success (branch merged to main)
 - **Technical debt** — Are we creating debt or paying it down?
 
 ## Test Files
-- `v1/src/__tests__/store.test.ts` — Store CRUD, search, cleanup, errors (BDD-style)
-- `v1/src/__tests__/worktree-pool.test.ts` — WorktreePool lifecycle
-- `v1/src/__tests__/scheduler.test.ts` — Submit, cancel, stats, queue position
-- `v1/src/__tests__/agent-runner.test.ts` — Cost estimation, code review, system prompt, CLI dispatch
-- `v1/src/__tests__/server.test.ts` — API input validation (prompt, timeout, priority, tags, webhookUrl)
+- `src/__tests__/store.test.ts` — Store CRUD, search, cleanup, errors (BDD-style)
+- `src/__tests__/worktree-pool.test.ts` — WorktreePool lifecycle
+- `src/__tests__/scheduler.test.ts` — Submit, cancel, stats, queue position
+- `src/__tests__/agent-runner.test.ts` — Cost estimation, code review, system prompt, CLI dispatch
+- `src/__tests__/server.test.ts` — API input validation (prompt, timeout, priority, tags, webhookUrl)
 
 ## Repository
 - **GitHub**: `agent-next/cc-manager` (private)
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 6581d00..3966b7e 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -11,10 +11,7 @@ Thank you for your interest in contributing! This document covers everything you
 git clone https://github.com/agent-next/cc-manager.git
 cd cc-manager
 
-# 2. Move into the main application directory
-cd v1
-
-# 3. Install dependencies (also sets up pre-commit hooks)
+# 2. Install dependencies (also sets up pre-commit hooks)
 npm install
 
 # 4. Start the development server
@@ -27,39 +24,13 @@ npm run dev
 
 ## Project Structure
 
-```
-cc-manager/
-├── v1/                        # Main TypeScript/Node.js application
-│   ├── src/
-│   │   ├── index.ts           # CLI entry point — parses options and wires up core components
-│   │   ├── scheduler.ts       # Task queue and worker orchestration (FIFO, priority levels)
-│   │   ├── agent-runner.ts    # Multi-agent spawning (SDK + CLI), cost tracking, code review
-│   │   ├── worktree-pool.ts   # Git worktree lifecycle — creates, resets, and merges worktrees
-│   │   ├── server.ts          # Hono REST API + Server-Sent Events endpoint
-│   │   ├── store.ts           # SQLite persistence via better-sqlite3 (WAL mode)
-│   │   ├── types.ts           # Shared TypeScript interfaces (Task, Worker, Stats, Config)
-│   │   ├── logger.ts          # Lightweight logging utility
-│   │   └── web/
-│   │       └── index.html     # Web dashboard — real-time task monitoring UI (no frameworks)
-│   ├── tsconfig.json          # TypeScript compiler configuration
-│   └── package.json           # Dependencies and npm scripts
-├── .githooks/                 # Git hooks (pre-commit: tsc + tests)
-├── .github/workflows/         # CI/CD (GitHub Actions)
-├── docs/                      # Design documents, API reference, planning notes
-├── README.md                  # Quick-start guide and API reference
-├── CLAUDE.md                  # Development rules injected into agent system prompts
-├── CHANGELOG.md               # Release notes
-└── CONTRIBUTING.md            # This file
-```
+See [ARCHITECTURE.md](ARCHITECTURE.md) for the full module dependency graph.
 
 ---
 
 ## Running Tests
 
 ```bash
-# From the v1/ directory
-cd v1
-
 # Run all tests (71 BDD-style tests across 5 suites)
 npm test
 
@@ -99,7 +70,7 @@ Pre-commit hooks run both `tsc` and `npm test` automatically. All type errors an
 
 ## Code Style
 
-- **Language:** All application code is written in **TypeScript**. Do not add plain `.js` source files under `v1/src/`.
+- **Language:** All application code is written in **TypeScript**. Do not add plain `.js` source files under `src/`.
 - **Imports:** Always use `.js` extensions in import paths, even when importing `.ts` files:
   ```ts
   // correct
diff --git a/README.md b/README.md
index 535f500..4bb6558 100644
--- a/README.md
+++ b/README.md
@@ -36,7 +36,7 @@ A multi-agent orchestrator that runs parallel coding agents in git worktrees. Su
 ## Documentation
 
 - GitHub Pages: <https://agent-next.github.io/cc-manager/>
-- Docs home (in repo): [docs/index.html](docs/index.html)
+- Docs home (in repo): [docs/site/index.html](docs/site/index.html)
 - Getting started: [docs/GETTING_STARTED.md](docs/GETTING_STARTED.md)
 - Operations guide: [docs/OPERATIONS.md](docs/OPERATIONS.md)
 - Configuration reference: [docs/CONFIGURATION.md](docs/CONFIGURATION.md)
@@ -83,8 +83,6 @@ yarn global add cc-manager
 Or run from source (no global install):
 
 ```bash
-cd v1
-
 # npm
 npm install && npm run build
 
@@ -139,64 +137,9 @@ curl -X POST http://localhost:8080/api/tasks \
 
 ## API
 
-### Task Management
-
-| Method | Endpoint | Description |
-|--------|----------|-------------|
-| `POST` | `/api/tasks` | Submit a task |
-| `POST` | `/api/tasks/batch` | Submit multiple tasks |
-| `GET` | `/api/tasks` | List tasks (`?status`, `?limit`, `?offset`, `?tag`) |
-| `GET` | `/api/tasks/search?q=keyword` | Search tasks by prompt/output |
-| `GET` | `/api/tasks/errors` | Recent failures |
-| `GET` | `/api/tasks/:id` | Full task detail with queue position |
-| `GET` | `/api/tasks/:id/diff` | Git diff for completed task |
-| `GET` | `/api/tasks/:id/output` | Raw task output |
-| `POST` | `/api/tasks/:id/retry` | Requeue a failed task |
-| `DELETE` | `/api/tasks/:id` | Cancel a pending task |
-| `DELETE` | `/api/tasks/cleanup?days=30` | Remove old completed tasks |
-
-### Monitoring
-
-| Method | Endpoint | Description |
-|--------|----------|-------------|
-| `GET` | `/api/stats` | Queue depth, workers, cost breakdown |
-| `GET` | `/api/stats/daily` | Daily stats (total, success, cost) |
-| `GET` | `/api/workers` | Worker pool status |
-| `GET` | `/api/events` | SSE stream |
-| `GET` | `/api/health` | Health check |
-| `GET` | `/api/budget` | Budget status and remaining spend |
-| `GET` | `/api/insights` | Historical performance metrics |
-
-### Self-Evolution
-
-| Method | Endpoint | Description |
-|--------|----------|-------------|
-| `GET` | `/api/evolution/log` | Evolution analysis history |
-| `POST` | `/api/evolution/analyze` | Trigger round analysis |
-| `GET` | `/api/docs` | API documentation |
-
-### POST /api/tasks body
-
-```json
-{
-  "prompt": "Refactor the auth module to use JWT",
-  "timeout": 300,
-  "maxBudget": 5,
-  "priority": "high",
-  "tags": ["auth", "refactor"],
-  "agent": "claude",
-  "webhookUrl": "https://example.com/hook"
-}
-```
-
-### SSE events on GET /api/events
+See [docs/API.md](docs/API.md) for the complete API reference with request/response examples.
 
-| Event | When |
-|-------|------|
-| `task_queued` | Task accepted into queue |
-| `task_started` | Worker assigned, agent running |
-| `task_progress` | Agent output streaming |
-| `task_final` | Completed (success/failed/timeout) |
+Quick overview: 20+ REST endpoints for task management, monitoring, and self-evolution. Real-time updates via SSE at `GET /api/events`.
 
 ## Multi-Agent Architecture
 
@@ -220,24 +163,7 @@ pending → running → success  (branch merged to main)
 
 ## Project Structure
 
-```
-cc-manager/
-├── v1/
-│   ├── src/
-│   │   ├── index.ts           # CLI entry point (Commander.js)
-│   │   ├── scheduler.ts       # Priority queue, retry, budget enforcement
-│   │   ├── agent-runner.ts    # Multi-agent CLI spawning + code review
-│   │   ├── worktree-pool.ts   # Git worktree lifecycle
-│   │   ├── server.ts          # Hono REST API + SSE
-│   │   ├── store.ts           # SQLite persistence (better-sqlite3)
-│   │   ├── types.ts           # Shared TypeScript types
-│   │   ├── logger.ts          # Structured JSON logger with levels
-│   │   ├── web/index.html     # Dashboard (dark/light theme)
-│   │   └── __tests__/         # BDD-style test suites (71 tests)
-│   ├── package.json
-│   └── tsconfig.json
-└── CLAUDE.md                  # Agent instructions & project spec
-```
+See [ARCHITECTURE.md](ARCHITECTURE.md) for the module dependency graph and data flow.
 
 ## Tech Stack
 
diff --git a/docs/CONFIGURATION.md b/docs/CONFIGURATION.md
index a1df830..9a28e64 100644
--- a/docs/CONFIGURATION.md
+++ b/docs/CONFIGURATION.md
@@ -1,6 +1,6 @@
 # Configuration Reference
 
-This document describes all configuration options for cc-manager (v1).
+This document describes all configuration options for cc-manager.
 
 ---
 
diff --git a/docs/GETTING_STARTED.md b/docs/GETTING_STARTED.md
index e8bb75c..de57ea7 100644
--- a/docs/GETTING_STARTED.md
+++ b/docs/GETTING_STARTED.md
@@ -96,7 +96,7 @@ curl http://localhost:8080/api/tasks/<task-id>/diff
 
 ```bash
 git clone https://github.com/agent-next/cc-manager.git
-cd cc-manager/v1
+cd cc-manager
 npm install
 npm run build
 node dist/index.js --repo /path/to/your/repo
diff --git a/docs/OPERATIONS.md b/docs/OPERATIONS.md
index 1381a06..5024203 100644
--- a/docs/OPERATIONS.md
+++ b/docs/OPERATIONS.md
@@ -57,14 +57,13 @@ sudo systemctl status cc-manager
 ## Upgrade Procedure
 
 1. Pull latest code.
-2. Install dependencies in `v1/`.
+2. Install dependencies.
 3. Build TypeScript output.
 4. Restart service.
 5. Run health and smoke checks.
 
 ```bash
 git pull
-cd v1
 npm ci
 npm run build
 sudo systemctl restart cc-manager
diff --git a/docs/index.html b/docs/site/index.html
similarity index 100%
rename from docs/index.html
rename to docs/site/index.html
diff --git a/docs/site.css b/docs/site/site.css
similarity index 100%
rename from docs/site.css
rename to docs/site/site.css
diff --git a/v1/package-lock.json b/package-lock.json
similarity index 99%
rename from v1/package-lock.json
rename to package-lock.json
index bd76f7d..1f36b81 100644
--- a/v1/package-lock.json
+++ b/package-lock.json
@@ -1,12 +1,12 @@
 {
   "name": "cc-manager",
-  "version": "0.1.0-alpha",
+  "version": "0.1.0",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "cc-manager",
-      "version": "0.1.0-alpha",
+      "version": "0.1.0",
       "license": "MIT",
       "dependencies": {
         "@anthropic-ai/claude-agent-sdk": "^0.2.62",
@@ -16,6 +16,7 @@
         "hono": "^4.6.0"
       },
       "bin": {
+        "cc-m": "dist/cli.js",
         "cc-manager": "dist/index.js"
       },
       "devDependencies": {
diff --git a/v1/package.json b/package.json
similarity index 87%
rename from v1/package.json
rename to package.json
index 3a703c0..eea524a 100644
--- a/v1/package.json
+++ b/package.json
@@ -22,11 +22,11 @@
     "node": ">=20"
   },
   "scripts": {
-    "build": "tsc",
+    "build": "tsc && mkdir -p dist/web && cp src/web/index.html dist/web/index.html",
     "start": "node dist/index.js",
     "dev": "tsx src/index.ts",
     "test": "node --import tsx --test src/__tests__/*.test.ts",
-    "prepare": "cd .. && git config core.hooksPath .githooks"
+    "prepare": "git config core.hooksPath .githooks"
   },
   "dependencies": {
     "@anthropic-ai/claude-agent-sdk": "^0.2.62",
diff --git a/v1/src/__tests__/agent-runner.test.ts b/src/__tests__/agent-runner.test.ts
similarity index 100%
rename from v1/src/__tests__/agent-runner.test.ts
rename to src/__tests__/agent-runner.test.ts
diff --git a/v1/src/__tests__/scheduler.test.ts b/src/__tests__/scheduler.test.ts
similarity index 100%
rename from v1/src/__tests__/scheduler.test.ts
rename to src/__tests__/scheduler.test.ts
diff --git a/v1/src/__tests__/server.test.ts b/src/__tests__/server.test.ts
similarity index 100%
rename from v1/src/__tests__/server.test.ts
rename to src/__tests__/server.test.ts
diff --git a/v1/src/__tests__/store.test.ts b/src/__tests__/store.test.ts
similarity index 100%
rename from v1/src/__tests__/store.test.ts
rename to src/__tests__/store.test.ts
diff --git a/v1/src/__tests__/worktree-pool.test.ts b/src/__tests__/worktree-pool.test.ts
similarity index 100%
rename from v1/src/__tests__/worktree-pool.test.ts
rename to src/__tests__/worktree-pool.test.ts
diff --git a/v1/src/agent-runner.ts b/src/agent-runner.ts
similarity index 100%
rename from v1/src/agent-runner.ts
rename to src/agent-runner.ts
diff --git a/v1/src/cli.ts b/src/cli.ts
similarity index 100%
rename from v1/src/cli.ts
rename to src/cli.ts
diff --git a/v1/src/index.ts b/src/index.ts
similarity index 100%
rename from v1/src/index.ts
rename to src/index.ts
diff --git a/v1/src/logger.ts b/src/logger.ts
similarity index 100%
rename from v1/src/logger.ts
rename to src/logger.ts
diff --git a/v1/src/scheduler.ts b/src/scheduler.ts
similarity index 100%
rename from v1/src/scheduler.ts
rename to src/scheduler.ts
diff --git a/v1/src/server.ts b/src/server.ts
similarity index 100%
rename from v1/src/server.ts
rename to src/server.ts
diff --git a/v1/src/store.ts b/src/store.ts
similarity index 100%
rename from v1/src/store.ts
rename to src/store.ts
diff --git a/v1/src/types.ts b/src/types.ts
similarity index 97%
rename from v1/src/types.ts
rename to src/types.ts
index c2bf244..c12de74 100644
--- a/v1/src/types.ts
+++ b/src/types.ts
@@ -144,11 +144,11 @@ export const defaultAutoFlywheelConfig: AutoFlywheelConfig = {
   minSuccessRate: 0.8,
   cooldownMinutes: 30,
   targetFiles: [
-    "v1/src/types.ts",
-    "v1/src/queue.ts",
-    "v1/src/server.ts",
-    "v1/src/worker.ts",
-    "v1/src/routes.ts",
+    "src/types.ts",
+    "src/store.ts",
+    "src/server.ts",
+    "src/scheduler.ts",
+    "src/agent-runner.ts",
   ],
 };
 
diff --git a/v1/src/web/index.html b/src/web/index.html
similarity index 100%
rename from v1/src/web/index.html
rename to src/web/index.html
diff --git a/v1/src/worktree-pool.ts b/src/worktree-pool.ts
similarity index 99%
rename from v1/src/worktree-pool.ts
rename to src/worktree-pool.ts
index 07fe308..15b55ee 100644
--- a/v1/src/worktree-pool.ts
+++ b/src/worktree-pool.ts
@@ -149,7 +149,7 @@ export class WorktreePool {
 
     try {
       // Exclude node_modules from clean — we symlink it for build verification
-      await this.gitIn(w.path, "clean", "-fdx", "-e", "node_modules", "-e", "v1/node_modules");
+      await this.gitIn(w.path, "clean", "-fdx", "-e", "node_modules");
     } catch (err) {
       log("warn", "[pool] clean failed (non-fatal)", { worker: w.name, err: String(err) });
     }
diff --git a/v1/tsconfig.json b/tsconfig.json
similarity index 100%
rename from v1/tsconfig.json
rename to tsconfig.json