Add AI-generated documentation for coding agents

Author: john-aigora

.ai-docs/architecture.md

@@ -0,0 +1,3 @@
+# Contributor Guide
+
+*See the project README for contribution guidelines.*

.ai-docs/contributor.md

@@ -0,0 +1,23 @@
+# Coding Conventions
+
+> **Note**: This document provides guidance on where to find conventions.
+> For specific details, check the referenced files directly.
+
+## Where to Find Conventions
+
+### Naming Patterns
+- Check existing files for naming conventions
+- Check types definitions for interface organization patterns
+
+### Code Standards
+- **Schema Patterns**: Check for schema validation patterns (e.g. Zod)
+- **Error Handling**: Review how errors are caught and reported
+- **Async Patterns**: Observe how async/await and promises are handled
+
+### UI/UX Patterns
+- **State Management**: Review state hooks and context usage
+- **Components**: Check shared UI components for reusable patterns
+
+### Integration Patterns
+- **API Patterns**: Review API route handlers for request/response structures
+- **Data Fetching**: Review how external data is fetched and cached

.ai-docs/conventions.md

@@ -0,0 +1,64 @@
+# Module Dependencies
+
+## System Graph
+
+```mermaid
+graph TD
+    A[root-files]
+    B[senspy]
+    C[tests]
+    D[.github]
+    E[.claude]
+```
+
+## Module Details
+
+### root-files
+
+Files in repository root/
+
+**Depends on:** *(none)*
+**Used by:** *(none)*
+
+### senspy
+
+Files in senspy/
+
+**Depends on:** *(none)*
+**Used by:** *(none)*
+
+### tests
+
+Files in tests/
+
+**Depends on:** *(none)*
+**Used by:** *(none)*
+
+### .github
+
+Files in .github/
+
+**Depends on:** *(none)*
+**Used by:** *(none)*
+
+### .claude
+
+Files in .claude/
+
+**Depends on:** *(none)*
+**Used by:** *(none)*
+
+## High-Connectivity Files
+
+Files with the highest semantic importance scores, indicating broad connectivity across the codebase.
+
+- `README.md` (score: 0)
+- `pyproject.toml` (score: 0)
+- `CONTRIBUTING.md` (score: 0)
+- `mkdocs.yml` (score: 0)
+- `senspy/__init__.py` (score: 0)
+- `senspy/anota.py` (score: 0)
+- `senspy/betabin.py` (score: 0)
+- `senspy/discrim.py` (score: 0)
+- `senspy/dod.py` (score: 0)
+- `senspy/dprime_tests.py` (score: 0)

.ai-docs/dependencies.md

@@ -0,0 +1,5 @@
+# Gotchas & Caveats
+
+This document covers non-obvious behaviors, edge cases, and things to watch out for.
+
+*No specific gotchas were identified during documentation generation.*

.ai-docs/gotchas.md

@@ -0,0 +1,93 @@
+# Codebase Manifest
+
+> Auto-generated documentation for **aigorahub/sensPy**
+
+## Directory Structure
+
+- **`root/`** (4 files): Files in repository root/
+- **`senspy/`** (22 files): Files in senspy/
+- **`tests/`** (26 files): Files in tests/
+- **`.github/`** (8 files): Files in .github/
+- **`.claude/`** (1 file): Files in .claude/
+
+## Key Entry Points
+
+*No entry points identified in skeleton.*
+
+## Module File Index
+
+### root-files
+
+- `README.md`
+- `pyproject.toml`
+- `CONTRIBUTING.md`
+- `mkdocs.yml`
+
+### senspy
+
+- `senspy/__init__.py`
+- `senspy/anota.py`
+- `senspy/betabin.py`
+- `senspy/discrim.py`
+- `senspy/dod.py`
+- `senspy/dprime_tests.py`
+- `senspy/plotting.py`
+- `senspy/power.py`
+- `senspy/protocol_power.py`
+- `senspy/roc.py`
+- `senspy/samediff.py`
+- `senspy/simulation.py`
+- `senspy/twoac.py`
+- `senspy/core/__init__.py`
+- `senspy/core/base.py`
+- `senspy/core/types.py`
+- `senspy/links/__init__.py`
+- `senspy/links/double.py`
+- `senspy/links/psychometric.py`
+- `senspy/utils/__init__.py`
+- `senspy/utils/stats.py`
+- `senspy/utils/transforms.py`
+
+### tests
+
+- `tests/__init__.py`
+- `tests/conftest.py`
+- `tests/test_anota.py`
+- `tests/test_betabin.py`
+- `tests/test_coverage_discrim.py`
+- `tests/test_coverage_dod.py`
+- `tests/test_coverage_links.py`
+- `tests/test_coverage_power.py`
+- `tests/test_coverage_samediff.py`
+- `tests/test_coverage_utils.py`
+- `tests/test_discrim.py`
+- `tests/test_dod.py`
+- `tests/test_double_links.py`
+- `tests/test_dprime_tests.py`
+- `tests/test_links.py`
+- `tests/test_plotting.py`
+- `tests/test_power.py`
+- `tests/test_protocol_power.py`
+- `tests/test_roc.py`
+- `tests/test_samediff.py`
+- `tests/test_sensr_validation.py`
+- `tests/test_simulation.py`
+- `tests/test_twoac.py`
+- `tests/test_types.py`
+- `tests/test_utils.py`
+- `tests/fixtures/golden_sensr.json`
+
+### .github
+
+- `.github/ISSUE_TEMPLATE/bug_report.md`
+- `.github/pull_request_template.md`
+- `.github/workflows/auto-comment-gemini-review.yml`
+- `.github/workflows/claude-code-review.yml`
+- `.github/workflows/claude.yml`
+- `.github/workflows/docs.yml`
+- `.github/workflows/publish.yml`
+- `.github/workflows/pytest.yml`
+
+### .claude
+
+- `.claude/settings.local.json`