chore(privacy): Remove hardcoded paths and personal identifiers

.gitignore

@@ -109,6 +109,13 @@ temp/
 test_venv/
 .claude-plugin/
 
+# Pytest temp artifacts (macOS/Linux temp directories)
+# Prevents accidentally committing test artifacts with personal paths
+/private/
+\\private/
+**/pytest-of-*/
+**/pytest-*/
+
 # Session logs (all of them)
 docs/sessions/
 

.mcp/README.md

@@ -143,11 +143,11 @@ Defines which MCP servers to run and their configuration:
   "mcpServers": {
     "filesystem": {
       "command": "npx",
-      "args": ["-y", "@modelcontextprotocol/server-filesystem", "/Users/akaszubski/Documents/GitHub/autonomous-dev"]
+      "args": ["-y", "@modelcontextprotocol/server-filesystem", "${CLAUDE_PROJECT_DIR}"]
     },
     "git": {
       "command": "npx",
-      "args": ["-y", "@modelcontextprotocol/server-git", "--repository", "/Users/akaszubski/Documents/GitHub/autonomous-dev"]
+      "args": ["-y", "@modelcontextprotocol/server-git", "--repository", "${CLAUDE_PROJECT_DIR}"]
     },
     "github": {
       "command": "docker",
@@ -308,7 +308,7 @@ Defines permission rules for all MCP operations.
 **Configuration**:
 ```bash
 # Repository root (from config.json)
-"--repository /Users/akaszubski/Documents/GitHub/autonomous-dev"
+"--repository ${CLAUDE_PROJECT_DIR}"
 ```
 
 ### GitHub Server

.mcp/config.json

@@ -5,7 +5,7 @@
       "args": [
         "-y",
         "@modelcontextprotocol/server-filesystem",
-        "/Users/akaszubski/Documents/GitHub/autonomous-dev"
+        "${CLAUDE_PROJECT_DIR}"
       ]
     },
     "git": {
@@ -14,7 +14,7 @@
         "-y",
         "@modelcontextprotocol/server-git",
         "--repository",
-        "/Users/akaszubski/Documents/GitHub/autonomous-dev"
+        "${CLAUDE_PROJECT_DIR}"
       ]
     },
     "github": {

docs/DEVELOPMENT.md

@@ -10,7 +10,7 @@
 
 ```bash
 # 1. Check you're in the repo
-pwd  # Should show: /Users/akaszubski/Documents/GitHub/autonomous-dev
+pwd  # Should show: ${PROJECT_ROOT}
 
 # 2. After ANY file changes, resync
 ./scripts/resync-dogfood.sh  # Copies plugins/* → .claude/* (no restart needed!)
@@ -129,7 +129,7 @@ rm -f ~/.claude/plugins/known_marketplaces.json
 # 1. Restart Claude Code
 
 # 2. In your autonomous-dev repo:
-cd /Users/akaszubski/Documents/GitHub/autonomous-dev
+cd ${PROJECT_ROOT}
 
 # 3. Run bootstrap (copies plugin files to project)
 bash install.sh
@@ -1054,7 +1054,7 @@ gh issue list --label "validate-need"
 I'm working on autonomous-dev plugin development (dogfooding mode).
 
 Context:
-- Repo: /Users/akaszubski/Documents/GitHub/autonomous-dev
+- Repo: ${PROJECT_ROOT}
 - Role: Plugin developer (not user)
 - Setup: Read docs/DEVELOPMENT.md for full context
 

docs/MCP-ARCHITECTURE.md

@@ -343,11 +343,11 @@ def validate_web_request(url: str, policy: Policy) -> ValidationResult:
   "mcpServers": {
     "filesystem": {
       "command": "npx",
-      "args": ["-y", "@modelcontextprotocol/server-filesystem", "/Users/akaszubski/Documents/GitHub/autonomous-dev"]
+      "args": ["-y", "@modelcontextprotocol/server-filesystem", "${PROJECT_ROOT}"]
     },
     "git": {
       "command": "npx",
-      "args": ["-y", "@modelcontextprotocol/server-git", "--repository", "/Users/akaszubski/Documents/GitHub/autonomous-dev"]
+      "args": ["-y", "@modelcontextprotocol/server-git", "--repository", "${PROJECT_ROOT}"]
     },
     "github": {
       "command": "docker",
@@ -426,7 +426,7 @@ def validate_web_request(url: str, policy: Policy) -> ValidationResult:
       "args": [
         "-y",
         "@modelcontextprotocol/server-filesystem",
-        "/Users/akaszubski/Documents/GitHub/autonomous-dev"
+        "${PROJECT_ROOT}"
       ]
     },
     "git": {
@@ -435,7 +435,7 @@ def validate_web_request(url: str, policy: Policy) -> ValidationResult:
         "-y",
         "@modelcontextprotocol/server-git",
         "--repository",
-        "/Users/akaszubski/Documents/GitHub/autonomous-dev"
+        "${PROJECT_ROOT}"
       ]
     },
     "github": {

docs/MCP-SECURITY.md

@@ -112,7 +112,7 @@ The system now integrates with official MCP servers for each capability:
       "args": [
         "-y",
         "@modelcontextprotocol/server-filesystem",
-        "/Users/akaszubski/Documents/GitHub/autonomous-dev"
+        "${PROJECT_ROOT}"
       ]
     },
     "git": {
@@ -121,7 +121,7 @@ The system now integrates with official MCP servers for each capability:
         "-y",
         "@modelcontextprotocol/server-git",
         "--repository",
-        "/Users/akaszubski/Documents/GitHub/autonomous-dev"
+        "${PROJECT_ROOT}"
       ]
     },
     "github": {

docs/MIGRATION_GUIDE.md

@@ -145,7 +145,7 @@ diff -r .claude.backup.$(date +%Y%m%d) .claude
 The realign project already has bootstrap files from our earlier testing:
 
 ```bash
-cd /Users/akaszubski/Documents/GitHub/realign
+cd /path/to/your/realign-project
 
 # Check current state
 ls .claude/commands/

docs/SECURITY_AUDIT_INDEX.md

@@ -9,7 +9,7 @@
 ## Quick Links to Audit Documents
 
 ### 1. Executive Summary (Start here)
-**File**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/SECURITY_AUDIT_COMPREHENSIVE.md`  
+**File**: `${PROJECT_ROOT}/SECURITY_AUDIT_COMPREHENSIVE.md`  
 **Length**: 251 lines  
 **Contains**:
 - Overview of vulnerabilities
@@ -23,7 +23,7 @@
 ---
 
 ### 2. Detailed Vulnerability Report
-**File**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/SECURITY_AUDIT_ISSUE72.md`  
+**File**: `${PROJECT_ROOT}/SECURITY_AUDIT_ISSUE72.md`  
 **Length**: 321 lines  
 **Contains**:
 - Complete vulnerability details
@@ -38,7 +38,7 @@
 ---
 
 ### 3. Session Log
-**File**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/docs/sessions/20251112-security-audit-issue72.md`  
+**File**: `${PROJECT_ROOT}/docs/sessions/20251112-security-audit-issue72.md`  
 **Length**: ~100 lines  
 **Contains**:
 - Audit summary

docs/TESTS_INDEX.md

@@ -3,11 +3,11 @@
 ## Quick Navigation
 
 ### Executive Summaries
-- **[TDD_RED_PHASE_SUMMARY.md](/Users/akaszubski/Documents/GitHub/autonomous-dev/TDD_RED_PHASE_SUMMARY.md)** - High-level overview of all 96 tests, success criteria, and implementation roadmap
-- **[tests/PHASE_8_PERFORMANCE_TESTS_SUMMARY.md](/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/PHASE_8_PERFORMANCE_TESTS_SUMMARY.md)** - Comprehensive technical reference for all phases
+- **[TDD_RED_PHASE_SUMMARY.md](${PROJECT_ROOT}/TDD_RED_PHASE_SUMMARY.md)** - High-level overview of all 96 tests, success criteria, and implementation roadmap
+- **[tests/PHASE_8_PERFORMANCE_TESTS_SUMMARY.md](${PROJECT_ROOT}/tests/PHASE_8_PERFORMANCE_TESTS_SUMMARY.md)** - Comprehensive technical reference for all phases
 
 ### Test Directories
-- **[tests/unit/performance/](/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/unit/performance/)** - All 4 test modules
+- **[tests/unit/performance/](${PROJECT_ROOT}/tests/unit/performance/)** - All 4 test modules
   - [test_phase8_5_profiler_integration.py](#phase-85-profiler-integration) (27 tests)
   - [test_phase9_model_downgrade.py](#phase-9-model-downgrade) (19 tests)
   - [test_phase10_prompt_streamlining.py](#phase-10-prompt-streamlining) (22 tests)
@@ -19,7 +19,7 @@
 ## Test Files Overview
 
 ### Phase 8.5: Profiler Integration
-**File**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/unit/performance/test_phase8_5_profiler_integration.py`
+**File**: `${PROJECT_ROOT}/tests/unit/performance/test_phase8_5_profiler_integration.py`
 
 **Size**: 662 lines, 25 KB | **Tests**: 27 | **Classes**: 6
 
@@ -62,7 +62,7 @@
 ---
 
 ### Phase 9: Model Downgrade
-**File**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/unit/performance/test_phase9_model_downgrade.py`
+**File**: `${PROJECT_ROOT}/tests/unit/performance/test_phase9_model_downgrade.py`
 
 **Size**: 607 lines, 22 KB | **Tests**: 19 | **Classes**: 4
 
@@ -103,7 +103,7 @@
 ---
 
 ### Phase 10: Prompt Streamlining
-**File**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/unit/performance/test_phase10_prompt_streamlining.py`
+**File**: `${PROJECT_ROOT}/tests/unit/performance/test_phase10_prompt_streamlining.py`
 
 **Size**: 470 lines, 18 KB | **Tests**: 22 | **Classes**: 6
 
@@ -153,7 +153,7 @@
 ---
 
 ### Phase 11: Partial Parallelization
-**File**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/unit/performance/test_phase11_partial_parallelization.py`
+**File**: `${PROJECT_ROOT}/tests/unit/performance/test_phase11_partial_parallelization.py`
 
 **Size**: 555 lines, 21 KB | **Tests**: 28 | **Classes**: 7
 
@@ -241,7 +241,7 @@
 
 ### All Tests
 ```bash
-cd /Users/akaszubski/Documents/GitHub/autonomous-dev
+cd ${PROJECT_ROOT}
 source .venv/bin/activate
 python -m pytest tests/unit/performance/ -v
 ```
@@ -382,20 +382,20 @@ python -m pytest tests/unit/performance/ --cov=plugins.autonomous_dev --cov-repo
 ## Quick Links
 
 ### Test Files
-- [test_phase8_5_profiler_integration.py](/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/unit/performance/test_phase8_5_profiler_integration.py)
-- [test_phase9_model_downgrade.py](/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/unit/performance/test_phase9_model_downgrade.py)
-- [test_phase10_prompt_streamlining.py](/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/unit/performance/test_phase10_prompt_streamlining.py)
-- [test_phase11_partial_parallelization.py](/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/unit/performance/test_phase11_partial_parallelization.py)
+- [test_phase8_5_profiler_integration.py](${PROJECT_ROOT}/tests/unit/performance/test_phase8_5_profiler_integration.py)
+- [test_phase9_model_downgrade.py](${PROJECT_ROOT}/tests/unit/performance/test_phase9_model_downgrade.py)
+- [test_phase10_prompt_streamlining.py](${PROJECT_ROOT}/tests/unit/performance/test_phase10_prompt_streamlining.py)
+- [test_phase11_partial_parallelization.py](${PROJECT_ROOT}/tests/unit/performance/test_phase11_partial_parallelization.py)
 
 ### Documentation
-- [TDD_RED_PHASE_SUMMARY.md](/Users/akaszubski/Documents/GitHub/autonomous-dev/TDD_RED_PHASE_SUMMARY.md)
-- [tests/PHASE_8_PERFORMANCE_TESTS_SUMMARY.md](/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/PHASE_8_PERFORMANCE_TESTS_SUMMARY.md)
-- [tests/unit/performance/README.md](/Users/akaszubski/Documents/GitHub/autonomous-dev/tests/unit/performance/README.md)
+- [TDD_RED_PHASE_SUMMARY.md](${PROJECT_ROOT}/TDD_RED_PHASE_SUMMARY.md)
+- [tests/PHASE_8_PERFORMANCE_TESTS_SUMMARY.md](${PROJECT_ROOT}/tests/PHASE_8_PERFORMANCE_TESTS_SUMMARY.md)
+- [tests/unit/performance/README.md](${PROJECT_ROOT}/tests/unit/performance/README.md)
 
 ### Implementation Reference
-- [CLAUDE.md](/Users/akaszubski/Documents/GitHub/autonomous-dev/CLAUDE.md) - Project standards
-- [PROJECT.md](/Users/akaszubski/Documents/GitHub/autonomous-dev/PROJECT.md) - Project goals
-- [plugins/autonomous-dev/agents/](/Users/akaszubski/Documents/GitHub/autonomous-dev/plugins/autonomous-dev/agents/) - Agent implementations
+- [CLAUDE.md](${PROJECT_ROOT}/CLAUDE.md) - Project standards
+- [PROJECT.md](${PROJECT_ROOT}/PROJECT.md) - Project goals
+- [plugins/autonomous-dev/agents/](${PROJECT_ROOT}/plugins/autonomous-dev/agents/) - Agent implementations
 
 ---
 

docs/design/DOCUMENTATION_UPDATES_PROGRESS_DISPLAY.md

@@ -34,7 +34,7 @@ Complete documentation package created for the real-time progress indicators fea
 
 ### 1. CHANGELOG.md Entry
 
-**Location**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/CHANGELOG.md` (lines 12-26)
+**Location**: `${PROJECT_ROOT}/CHANGELOG.md` (lines 12-26)
 
 **Content**:
 - Feature title and GitHub issue reference (#42)
@@ -49,7 +49,7 @@ Complete documentation package created for the real-time progress indicators fea
 
 ### 2. Plugin README.md Update
 
-**Location**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/plugins/autonomous-dev/README.md` (lines 923-981)
+**Location**: `${PROJECT_ROOT}/plugins/autonomous-dev/README.md` (lines 923-981)
 
 **Content**:
 - Feature overview with "NEW" indicator
@@ -66,7 +66,7 @@ Complete documentation package created for the real-time progress indicators fea
 
 ### 3. Integration Guide (New Document)
 
-**Location**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/docs/PROGRESS_DISPLAY_INTEGRATION.md` (15.9 KB)
+**Location**: `${PROJECT_ROOT}/docs/PROGRESS_DISPLAY_INTEGRATION.md` (15.9 KB)
 
 **Sections**:
 1. **Overview** - What the feature does and capabilities
@@ -94,7 +94,7 @@ Complete documentation package created for the real-time progress indicators fea
 
 ### 4. Implementation Guide (New Document)
 
-**Location**: `/Users/akaszubski/Documents/GitHub/autonomous-dev/docs/PROGRESS_DISPLAY_IMPLEMENTATION.md` (17.1 KB)
+**Location**: `${PROJECT_ROOT}/docs/PROGRESS_DISPLAY_IMPLEMENTATION.md` (17.1 KB)
 
 **Sections**:
 1. **Architecture Overview** - ASCII diagram of polling architecture

plugins/autonomous-dev/tests/integration/test_hook_path_portability.py

@@ -385,7 +385,7 @@ def user_environment(self, tmp_path):
                     "matcher": "*",
                     "hooks": [{
                         "type": "command",
-                        "command": "MCP_AUTO_APPROVE=true python3 /Users/akaszubski/Documents/GitHub/autonomous-dev/plugins/autonomous-dev/hooks/pre_tool_use.py"
+                        "command": "MCP_AUTO_APPROVE=true python3 ${PROJECT_ROOT}/plugins/autonomous-dev/hooks/pre_tool_use.py"
                     }]
                 }]
             }

plugins/autonomous-dev/tests/unit/test_hook_path_migration.py

@@ -26,7 +26,7 @@ def settings_hardcoded(self):
                         "hooks": [
                             {
                                 "type": "command",
-                                "command": "MCP_AUTO_APPROVE=true python3 /Users/akaszubski/Documents/GitHub/autonomous-dev/plugins/autonomous-dev/hooks/pre_tool_use.py"
+                                "command": "MCP_AUTO_APPROVE=true python3 ${PROJECT_ROOT}/plugins/autonomous-dev/hooks/pre_tool_use.py"
                             }
                         ]
                     }
@@ -64,7 +64,7 @@ def settings_multiple_hooks(self):
                         "hooks": [
                             {
                                 "type": "command",
-                                "command": "MCP_AUTO_APPROVE=true python3 /Users/akaszubski/Documents/GitHub/autonomous-dev/plugins/autonomous-dev/hooks/pre_tool_use.py"
+                                "command": "MCP_AUTO_APPROVE=true python3 ${PROJECT_ROOT}/plugins/autonomous-dev/hooks/pre_tool_use.py"
                             }
                         ]
                     }
@@ -251,7 +251,7 @@ def test_detects_various_hardcoded_patterns(self, settings_file):
         from autonomous_dev.scripts.migrate_hook_paths import migrate_hook_paths
 
         patterns = [
-            "/Users/akaszubski/Documents/GitHub/autonomous-dev/plugins/autonomous-dev/hooks/pre_tool_use.py",
+            "${PROJECT_ROOT}/plugins/autonomous-dev/hooks/pre_tool_use.py",
             "/home/user/projects/autonomous-dev/plugins/autonomous-dev/hooks/pre_tool_use.py",
             "C:\\Users\\user\\autonomous-dev\\plugins\\autonomous-dev\\hooks\\pre_tool_use.py",
             "/opt/autonomous-dev/plugins/autonomous-dev/hooks/pre_tool_use.py"