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GFA parsing fails with tags #1

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nrizzo opened this issue Apr 4, 2025 · 1 comment
Open

GFA parsing fails with tags #1

nrizzo opened this issue Apr 4, 2025 · 1 comment
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@nrizzo
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nrizzo commented Apr 4, 2025

compute_summary.py spits out an error if a GFA with S id seq LN:i:10 lines is given in input, because it does not seem to expect other fields after the sequence:

Traceback (most recent call last):
  File "compute_summary.py", line 361, in <module>
    compute_summary(parser.parse_args())
  File "compute_summary.py", line 237, in compute_summary
    vertex_labels, edges = load_graph(args.graph)
  File "compute_summary.py", line 18, in load_graph
    str_id, label = line[1:].strip().split()
@nrizzo nrizzo added the bug Something isn't working label Apr 4, 2025
@elarielcl elarielcl self-assigned this Apr 14, 2025
elarielcl pushed a commit that referenced this issue Apr 14, 2025
@elarielcl
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Thank you for noting this!
Please take a look at #2

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