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PreCommit Python ML tests with ML deps installed

Update ruff and pyrefly dependencies #34720

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Update ruff and pyrefly dependencies

Update ruff and pyrefly dependencies #34720

Run time

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Job Run time
beam_PreCommit_Python_ML (Run Python_ML PreCommit 3.13) (self-hosted, ubuntu-24.04, main)
42m 38s
beam_PreCommit_Python_ML (Run Python_ML PreCommit 3.10) (self-hosted, ubuntu-24.04, main)
29m 33s
beam_PreCommit_Python_ML (Run Python_ML PreCommit 3.12) (self-hosted, ubuntu-24.04, main)
35m 33s
beam_PreCommit_Python_ML (Run Python_ML PreCommit 3.13) (ubuntu-latest)
16m 32s
beam_PreCommit_Python_ML (Run Python_ML PreCommit 3.11) (self-hosted, ubuntu-24.04, main)
29m 55s
2h 34m 11s