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Notebooks for AGU 2025 sims#17

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infotroph merged 23 commits intomainfrom
agu-2025
Apr 7, 2026
Merged

Notebooks for AGU 2025 sims#17
infotroph merged 23 commits intomainfrom
agu-2025

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@dlebauer dlebauer requested a review from divine7022 February 19, 2026 16:25
Comment on lines +81 to +88
function(site_id, start_date, end_date, ens_id, ...) {
PEcAn.SIPNET::met2model.SIPNET(
in.path = file.path(
args$site_era5_path,
paste("ERA5", site_id, ens_id, sep = "_")
),
start_date = args$start_date,
end_date = args$end_date,
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function signature binds start_date and end_date from file_info, but lines 87-88 ignore them and use args$start_date / args$end_date instead; this works but is misleading, consider using the function parameter or removing it from the signature. (same pattern exists in 2a_grass/01_ERA5_nc_to_clim.R was this intentionally inherited?)

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fixed locally, will be in next PR

Comment thread 3_rowcrop/04_set_up_runs.R
Comment thread 3_rowcrop/README.md
Comment thread 3_rowcrop/README.md
facet_wrap(~site) +
theme_bw() +
ylab("LAI") +
xlab("DOY") +
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trailing + on the last ggplot layer save_gg(...) will be parsed as a ggplot layer addition and throw an error

Suggested change
xlab("DOY") +
xlab("DOY")

Comment thread 3_rowcrop/02_ic_build.R
Comment thread 3_rowcrop/README.md
Comment thread tools/run_CA_grid_ERA5_nc_extraction.R
Comment thread tools/run_CA_grid_ERA5_nc_extraction.R
Comment thread tools/build_validation_siteinfo.R
@infotroph infotroph merged commit 154012a into main Apr 7, 2026
@infotroph infotroph deleted the agu-2025 branch April 7, 2026 20:00
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2 participants