-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathpyproject.toml
106 lines (95 loc) · 2.5 KB
/
pyproject.toml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
[project]
name = "cryoet-data-portal-neuroglancer"
version = "1.1.0"
description = "Utility package for working with Neuroglancer data in the CZI Cryo-ET Data Portal"
authors = [
{name="CZI Imaging Team", email="[email protected]"},
{name="Sean Martin"},
{name="Vincent Aranega"},
]
license = "MIT"
readme = "README.md"
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Developers",
"Intended Audience :: Information Technology",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Programming Language :: Python",
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS :: MacOS X",
"Programming Language :: Python :: 3.11",
]
packages = [
{ include = "cryoet_data_portal_neuroglancer", from = "." },
]
repository = "https://github.com/chanzuckerberg/cryoet-data-portal-neuroglancer"
[tool.poetry]
name = "cryoet-data-portal-neuroglancer"
version = "1.1.0"
description = "Utility package for working with Neuroglancer data in the CZI Cryo-ET Data Portal"
authors = [
"CZI Imaging Team <[email protected]>",
"Sean Martin",
"Vincent Aranega",
]
[build-system]
requires = ["poetry-core>=2.0.0,<3.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.poetry.dependencies]
python = "^3.11"
zarr = "^2.18.2"
ome-zarr = "0.9.0"
neuroglancer = "^2.40.1"
cloud-files = "^4.27.0"
tqdm = "^4.66.5"
ndjson = "^0.3.1"
scikit-learn = "^1.5.1"
cloud-volume = "^10.4.0"
igneous-pipeline = "^4.25.0"
kimimaro = "^4.1.2"
numpy = "<2.0.0"
[tool.poetry.group.dev]
optional = true
[tool.poetry.group.dev.dependencies]
pytest = "^8.3.2"
ruff = "^0.6.2"
pre-commit = "^3.8.0"
pytest-cov = "^5.0.0"
mypy = "^1.11.2"
[tool.black]
line-length = 120
target_version = ['py311']
[tool.ruff]
line-length = 120
target-version = "py311"
[tool.ruff.lint]
select = [
"E", "W", # pycodestyle
"F", # pyflakes
"B", # bugbear
"I", # isort
"N", # pep8-naming
"ASYNC", # async
"COM", # commas
"C4", # comprehensions
"DTZ", # datetimez
"ISC", # implicit-str-concat
"G", # logging-format
"T20", # print
"SIM", # simplify
]
ignore = [
"E501", # line too long
"C408", # rewrite empty built-ins as literals
"T201", # print statements.
]
[tool.ruff.lint.isort]
known-first-party =["common"]
[tool.ruff.lint.flake8-quotes]
docstring-quotes = "double"
[tool.mypy]
show_error_codes = true
ignore_missing_imports = true
warn_unreachable = true
strict = true