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Merge pull request #1682 from cmu-delphi/release/delphi-epidata-4.1.37
Release Delphi Epidata 4.1.37
2 parents 929116c + d6e4270 commit bd26d1c

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‎.bumpversion.cfg‎

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[bumpversion]
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current_version = 4.1.36
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current_version = 4.1.37
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commit = False
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tag = False
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‎dev/local/setup.cfg‎

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[metadata]
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name = Delphi Development
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version = 4.1.36
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version = 4.1.37
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[options]
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packages =

‎docs/api/flusurv.md‎

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@@ -54,22 +54,45 @@ If neither is specified, the current issues are used.
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## Response
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| Field | Description | Type |
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|--------------------------|-----------------------------------------------------------------|------------------|
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| `result` | result code: 1 = success, 2 = too many results, -2 = no results | integer |
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| `epidata` | list of results | array of objects |
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| `epidata[].release_date` | | string |
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| `epidata[].location` | | string |
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| `epidata[].issue` | | integer |
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| `epidata[].epiweek` | | integer |
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| `epidata[].lag` | | integer |
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| `epidata[].rate_age_0` | | float |
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| `epidata[].rate_age_1` | | float |
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| `epidata[].rate_age_2` | | float |
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| `epidata[].rate_age_3` | | float |
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| `epidata[].rate_age_4` | | float |
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| `epidata[].rate_overall` | | float |
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| `message` | `success` or error message | string |
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| Field | Description | Type |
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|---|---|---|
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| `result` | result code: 1 = success, 2 = too many results, -2 = no results | integer |
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| `epidata` | list of results | array of objects |
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| `epidata[].release_date` | the date when this record was first received by Delphi | string |
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| `epidata[].location` | the name of the catchment (e.g. 'network_all', 'CA', 'NY_albany' | string |
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| `epidata[].issue` | the epiweek of receipt by Delphi (e.g. issue 201453 includes epiweeks up to and including 2014w53, but not 2015w01 or following) | integer |
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| `epidata[].epiweek` | the epiweek during which the data was collected | integer |
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| `epidata[].lag` | number of weeks between `epiweek` and `issue` | integer |
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| `epidata[].rate_age_0` | hospitalization rate for ages 0-4 | float |
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| `epidata[].rate_age_1` | hospitalization rate for ages 5-17 | float |
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| `epidata[].rate_age_2` | hospitalization rate for ages 18-49 | float |
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| `epidata[].rate_age_3` | hospitalization rate for ages 50-64 | float |
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| `epidata[].rate_age_4` | hospitalization rate for ages 65+ | float |
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| `epidata[].rate_overall` | overall hospitalization rate | float |
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| `epidata[].rate_age_5` | hospitalization rate for ages 65-74 | float |
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| `epidata[].rate_age_6` | hospitalization rate for ages 75-84 | float |
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| `epidata[].rate_age_7` | hospitalization rate for ages 85+ | float |
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| `epidata[].rate_age_18t29` | hospitalization rate for ages 18 to 29 | float |
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| `epidata[].rate_age_30t39` | hospitalization rate for ages 30 to 39 | float |
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| `epidata[].rate_age_40t49` | hospitalization rate for ages 40 to 49 | float |
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| `epidata[].rate_age_5t11` | hospitalization rate for ages 5 to 11 | float |
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| `epidata[].rate_age_12t17` | hospitalization rate for ages 12 to 17 | float |
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| `epidata[].rate_age_lt18` | hospitalization rate for ages <18 | float |
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| `epidata[].rate_age_gte18` | hospitalization rate for ages >=18 | float |
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| `epidata[].rate_age_0tlt1` | hospitalization rate for ages 0-1 | float |
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| `epidata[].rate_age_1t4` | hospitalization rate for ages 1-4 | float |
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| `epidata[].rate_age_gte75` | hospitalization rate for ages >=75 | float |
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| `epidata[].rate_race_white` | hospitalization rate for white people | float |
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| `epidata[].rate_race_black` | hospitalization rate for black people | float |
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| `epidata[].rate_race_hisp` | hospitalization rate for Hispanic/Latino people | float |
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| `epidata[].rate_race_asian` | hospitalization rate for Asian people | float |
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| `epidata[].rate_race_natamer` | hospitalization rate for American Indian/Alaskan Native people | float |
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| `epidata[].rate_sex_male` | hospitalization rate for males | float |
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| `epidata[].rate_sex_female` | hospitalization rate for females | float |
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| `epidata[].rate_flu_a` | hospitalization rate for inflenza A | float |
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| `epidata[].rate_flu_b` | hospitalization rate for inflenza B | float |
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| `epidata[].season` | indicates the start and end years of the winter flu season in the format YYYY-YY (e.g. 2022-23 indicates the flu season running late 2022 through early 2023) | string |
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| `message` | `success` or error message | string |
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Notes:
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* The `flusurv` age groups are, in general, not the same as the ILINet

‎integrations/server/test_flusurv.py‎

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@@ -10,9 +10,54 @@ def localSetUp(self):
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def test_flusurv(self):
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"""Basic integration test for flusurv endpoint"""
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# TODO: Should test out the whole pipeline, where we mock the source
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# API by pulling more realistic data from a local JSON.
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self.cur.execute(
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"INSERT INTO `flusurv`(`release_date`, `issue`, `epiweek`, `location`, `lag`, `rate_age_0`, `rate_age_1`, `rate_age_2`, `rate_age_3`, `rate_age_4`, `rate_overall`, `rate_age_5`, `rate_age_6`, `rate_age_7`) VALUES(%s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s)",
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("2012-11-02", "201243", "201143", "CA", "52", "0", "0", "0", "0.151", "0", "0.029", "0", "0", "0"),
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"""
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INSERT INTO `flusurv`(
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`release_date`,
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`issue`,
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`epiweek`,
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`location`,
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`lag`,
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`rate_age_0`,
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`rate_age_1`,
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`rate_age_2`,
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`rate_age_3`,
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`rate_age_4`,
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`rate_overall`,
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`rate_age_5`,
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`rate_age_6`,
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`rate_age_7`,
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`rate_age_18t29`,
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`rate_age_30t39`,
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`rate_age_40t49`,
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`rate_age_5t11`,
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`rate_age_12t17`,
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`rate_age_lt18`,
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`rate_age_gte18`,
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`rate_age_1t4`,
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`rate_age_gte75`,
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`rate_age_0tlt1`,
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`rate_race_white`,
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`rate_race_black`,
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`rate_race_hisp`,
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`rate_race_asian`,
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`rate_race_natamer`,
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`rate_sex_male`,
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`rate_sex_female`,
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`rate_flu_a`,
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`rate_flu_b`,
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`season`
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) VALUES(
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%s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s,
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%s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s
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)
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""",
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(
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"2012-11-02", 201243, 201143, "CA", 52, 0, 0, 0, 0.151, 0, 0.029, 0, 0, 0,
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2.54, 0, 1, 0, 0, 0, 0, 0, 0.68, 0.46, 1, 1, 0, 0, 0, 99, 0, 0, 22.2, "2012-13"
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),
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)
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self.cnx.commit()
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response = self.epidata_client.flusurv(epiweeks=201143, locations="CA")
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"location": "CA",
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"issue": 201243,
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"epiweek": 201143,
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"season": "2012-13",
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"lag": 52,
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"rate_age_0": 0.0,
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"rate_age_1": 0.0,
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"rate_age_2": 0.0,
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"rate_age_3": 0.151,
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"rate_age_4": 0.0,
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"rate_overall": 0.029,
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"rate_age_5": 0.0,
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"rate_age_6": 0.0,
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"rate_age_7": 0.0,
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"rate_age_18t29": 2.54,
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"rate_age_30t39": 0.0,
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"rate_age_40t49": 1.0,
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"rate_age_5t11": 0.0,
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"rate_age_12t17": 0.0,
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"rate_age_lt18": 0.0,
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"rate_age_gte18": 0.0,
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"rate_age_1t4": 0.0,
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"rate_age_gte75": 0.68,
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"rate_age_0tlt1": 0.46,
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"rate_race_white": 1.0,
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"rate_race_black": 1.0,
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"rate_race_hisp": 0.0,
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"rate_race_asian": 0.0,
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"rate_race_natamer": 0.0,
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"rate_sex_male": 99.0,
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"rate_sex_female": 0.0,
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"rate_flu_a": 0.0,
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"rate_flu_b": 22.2,
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}
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],
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"result": 1,

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