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Peter Amstutz
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Update for cwl-v1.1
1 parent 07ae1b6 commit c057fa6

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-265
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README.md

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@@ -49,8 +49,9 @@ A series of [video lessons about CWL](https://stepik.org/lesson/35918/step/1?uni
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## Specification
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For developers and advanced users, the current
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[CWL specification (v1.0.2)](https://www.commonwl.org/v1.0/) provides
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authoritative documentation of the execution of CWL documents.
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[CWL specification (v1.1)](https://www.commonwl.org/v1.1/) provides
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authoritative documentation of the execution of CWL documents. The previous version
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[CWL specification (v1.0.2)](https://www.commonwl.org/v1.0/) is also available.
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### Citation
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site/cwlsite-job.yaml

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@@ -12,8 +12,8 @@ render:
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# redirect: []
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- {$import: cwlsite-draft3-job.json}
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- {$import: cwlsite-v1.0.0-job.json}
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- {$import: cwlsite-v1.1.0-dev1-job.yaml}
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- {$import: cwlsite-v1.1.0-job.yaml}
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schemas:
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- {$import: cwlsite-draft3-schemas.json}
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- {$import: cwlsite-v1.0.0-schemas.json}
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- {$import: cwlsite-v1.1.0-dev1-schemas.yaml}
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- {$import: cwlsite-v1.1.0-schemas.yaml}

site/cwlsite-v1.1.0-dev1-schemas.yaml

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This file was deleted.

site/cwlsite-v1.1.0-dev1-job.yaml renamed to site/cwlsite-v1.1.0-job.yaml

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@@ -4,8 +4,8 @@
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primtype: null
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redirect: []
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renderlist: []
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source: {class: File, path: ../v1.1.0-dev1/index.md}
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target: v1.1.0-dev1/index.html
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source: {class: File, path: ../v1.1/index.md}
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target: v1.1/index.html
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extra: {class: File, path: empty}
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- brandimg: '<img src=''../CWL-Logo-Header.png'' style=''height: 61px; margin-top:
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-20px; margin-left: -20px''></img>'
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renderlist: ['https://w3id.org/cwl/cwl#CommandLineToolDoc', 'https://w3id.org/cwl/cwl#CommandLineTool']
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source:
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class: File
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path: ../v1.1.0-dev1/CommandLineTool-standalone.yml
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secondaryFiles: {$import: v1.1.0-dev1-deps.yaml}
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target: v1.1.0-dev1/CommandLineTool.html
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path: ../v1.1/CommandLineTool-standalone.yml
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secondaryFiles: {$import: v1.1.0-deps.yaml}
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target: v1.1/CommandLineTool.html
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extra:
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class: File
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path: ../v1.1.0-dev1/cwl-runner.cwl
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path: ../v1.1/cwl-runner.cwl
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- brandimg: '<img src=''../CWL-Logo-Header.png'' style=''height: 61px; margin-top:
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-20px; margin-left: -20px''></img>'
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brandlink: index.html
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renderlist: ['https://w3id.org/cwl/cwl#WorkflowDoc', 'https://w3id.org/cwl/cwl#Workflow']
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source:
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class: File
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path: ../v1.1.0-dev1/CommonWorkflowLanguage.yml
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secondaryFiles: {$import: v1.1.0-dev1-deps.yaml}
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target: v1.1.0-dev1/Workflow.html
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path: ../v1.1/CommonWorkflowLanguage.yml
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secondaryFiles: {$import: v1.1.0-deps.yaml}
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target: v1.1/Workflow.html
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extra: {class: File, path: empty}
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- brandimg: '<img src=''../CWL-Logo-Header.png'' style=''height: 61px; margin-top:
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-20px; margin-left: -20px''></img>'
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renderlist: ['https://w3id.org/cwl/salad#Semantic_Annotations_for_Linked_Avro_Data',
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'https://w3id.org/cwl/salad#SaladRecordSchema', 'https://w3id.org/cwl/salad#SaladEnumSchema',
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'https://w3id.org/cwl/salad#Documentation']
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source: {$import: v1.1.0-dev1-metaschema.yaml}
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target: v1.1.0-dev1/SchemaSalad.html
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source: {$import: v1.1.0-metaschema.yaml}
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target: v1.1/SchemaSalad.html
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extra: {class: File, path: empty}

site/cwlsite-v1.1.0-schemas.yaml

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- context_target: v1.1/cwl-context.json
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rdfs_target: v1.1/cwl.ttl
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graph_target: v1.1/cwl.svg
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schema_in:
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class: File
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path: ../v1.1/CommonWorkflowLanguage.yml
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secondaryFiles: {$import: v1.1.0-deps.yaml}
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- context_target: v1.1/salad-context.json
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rdfs_target: v1.1/salad.ttl
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graph_target: v1.1/salad.svg
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schema_in: {$import: v1.1.0-metaschema.yaml}

site/v1.1.0-deps.yaml

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- basename: Process.yml
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class: File
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location: ../v1.1/Process.yml
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secondaryFiles:
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- {basename: concepts.md, class: File, location: ../v1.1/concepts.md}
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- basename: salad
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class: Directory
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listing:
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- basename: schema_salad
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class: Directory
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listing:
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- basename: metaschema
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class: Directory
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listing:
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- {basename: metaschema_base.yml, class: File, location: ../v1.1/salad/schema_salad/metaschema/metaschema_base.yml}
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- basename: CommandLineTool.yml
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class: File
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location: ../v1.1/CommandLineTool.yml
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secondaryFiles:
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- {basename: contrib.md, class: File, location: ../v1.1/contrib.md}
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- {basename: concepts.md, class: File, location: ../v1.1/concepts.md}
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- {basename: invocation.md, class: File, location: ../v1.1/invocation.md}
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- {basename: intro.md, class: File, location: ../v1.1/intro.md}
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- basename: Workflow.yml
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class: File
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location: ../v1.1/Workflow.yml
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secondaryFiles:
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- {basename: contrib.md, class: File, location: ../v1.1/contrib.md}
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- {basename: concepts.md, class: File, location: ../v1.1/concepts.md}
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- {basename: intro.md, class: File, location: ../v1.1/intro.md}

site/v1.1.0-dev1-deps.yaml

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site/v1.1.0-dev1-metaschema.yaml

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