.pre-commit-config.yaml

# See https://pre-commit.com for more information
# See https://pre-commit.com/hooks.html for more hooks
default_language_version:
  python: python3.10
repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v5.0.0
    hooks:
      - id: trailing-whitespace
      - id: end-of-file-fixer
      - id: check-yaml
      - id: check-added-large-files
      - id: check-toml
  - repo: https://github.com/python-poetry/poetry
    rev: 1.8.0
    hooks:
      - id: poetry-check
  - repo: https://github.com/tox-dev/pyproject-fmt
    rev: "v2.5.0"
    hooks:
      - id: pyproject-fmt
  - repo: https://github.com/codespell-project/codespell
    rev: v2.3.0
    hooks:
      - id: codespell
        exclude: >
          (?x)^(
              .*\.lock|.*\.csv|.*\.cff
          )$
        additional_dependencies:
          - tomli
  - repo: https://github.com/executablebooks/mdformat
    rev: 0.7.18
    hooks:
      - id: mdformat
        additional_dependencies:
          - mdformat-myst
          - mdformat-gfm
  - repo: https://github.com/adrienverge/yamllint
    rev: v1.35.1
    hooks:
      - id: yamllint
  - repo: https://github.com/psf/black
    rev: 24.10.0
    hooks:
      - id: black
  - repo: https://github.com/asottile/blacken-docs
    rev: 1.19.1
    hooks:
      - id: blacken-docs
  - repo: https://github.com/PyCQA/bandit
    rev: 1.7.10
    hooks:
      - id: bandit
        args: ["-c", "pyproject.toml"]
        additional_dependencies: ["bandit[toml]"]
  - repo: https://github.com/PyCQA/isort
    rev: 5.13.2
    hooks:
      - id: isort
  - repo: https://github.com/jendrikseipp/vulture
    rev: v2.13
    hooks:
      - id: vulture
  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: v1.13.0
    hooks:
      - id: mypy
  - repo: https://github.com/citation-file-format/cffconvert
    rev: 5295f87c0e261da61a7b919fc754e3a77edd98a7
    hooks:
      - id: validate-cff
  - repo: https://github.com/PyCQA/pylint
    rev: v3.3.1
    hooks:
      - id: pylint
        name: pylint
        entry: pylint
        language: python
        types: [python]
        # note: we install additional dependencies for
        # pylint due to it's dynamic analysis capabilities
        # and the way pre-commit references virtual environments.
        additional_dependencies:
          - "cloudpathlib[all]>=0.13.0"
          - "pyarrow>=13.0.0"
          - "pytest>=7.2.0"
          - "moto[server,s3]>=4.0.0,<5.0.0"
          - "duckdb>=0.8.0"
          - "parsl>=2023.4.24"
          - "git+https://github.com/cytomining/pycytominer.git@09b2c79aa94908e3520f0931a844db4fba7fd3fb"