listing

Author: Christoph Jansen

generate-red.py

@@ -19,7 +19,49 @@
                     'url': 'https://s3.denbi.uni-tuebingen.de/fb-test/demo_container/cibi_user_meeting_2018/labelfree_example.tar.gz',
                     'archiveFormat': 'gztar'
                 }
-            }
+            },
+            'listing': [{
+                'class': 'Directory',
+                'basename': 'datasets',
+                'listing': [{
+                    'class': 'File',
+                    'basename': 'lfq_spikein_dilution_1.mzML'
+                }, {
+                    'class': 'File',
+                    'basename': 'lfq_spikein_dilution_2.mzML'
+                }, {
+                    'class': 'File',
+                    'basename': 'lfq_spikein_dilution_3.mzML'
+                }]
+            }, {
+                'class': 'Directory',
+                'basename': 'databases',
+                'listing': [{
+                    'class': 'File',
+                    'basename': 's_pyo_sf370_potato_human_target_decoy_with_contaminants.fasta'
+                }, {
+                    'class': 'File',
+                    'basename': 's_pyo_sf370_potato_human_target_decoy_with_contaminants.fasta.phr'
+                }, {
+                    'class': 'File',
+                    'basename': 's_pyo_sf370_potato_human_target_decoy_with_contaminants.fasta.pin'
+                }, {
+                    'class': 'File',
+                    'basename': 's_pyo_sf370_potato_human_target_decoy_with_contaminants.fasta.psq'
+                }, {
+                    'class': 'File',
+                    'basename': 'uniprot-s-pyogenes-sf370-plus-potato-and-human-spike-ins.fasta'
+                }, {
+                    'class': 'File',
+                    'basename': 'uniprot-s-pyogenes-sf370-plus-potato-and-human-spike-ins.fasta.phr'
+                }, {
+                    'class': 'File',
+                    'basename': 'uniprot-s-pyogenes-sf370-plus-potato-and-human-spike-ins.fasta.pin'
+                }, {
+                    'class': 'File',
+                    'basename': 'uniprot-s-pyogenes-sf370-plus-potato-and-human-spike-ins.fasta.psq'
+                }]
+            }]
         },
         'database_name': 's_pyo_sf370_potato_human_target_decoy_with_contaminants.fasta'
     },

knime-labelfree-quantification.red.yml

@@ -39,4 +39,30 @@ inputs:
     connector:
       access: {archiveFormat: gztar, url: 'https://s3.denbi.uni-tuebingen.de/fb-test/demo_container/cibi_user_meeting_2018/labelfree_example.tar.gz'}
       command: red-connector-http-archive
+    listing:
+    - basename: datasets
+      class: Directory
+      listing:
+      - {basename: lfq_spikein_dilution_1.mzML, class: File}
+      - {basename: lfq_spikein_dilution_2.mzML, class: File}
+      - {basename: lfq_spikein_dilution_3.mzML, class: File}
+    - basename: databases
+      class: Directory
+      listing:
+      - {basename: s_pyo_sf370_potato_human_target_decoy_with_contaminants.fasta,
+        class: File}
+      - {basename: s_pyo_sf370_potato_human_target_decoy_with_contaminants.fasta.phr,
+        class: File}
+      - {basename: s_pyo_sf370_potato_human_target_decoy_with_contaminants.fasta.pin,
+        class: File}
+      - {basename: s_pyo_sf370_potato_human_target_decoy_with_contaminants.fasta.psq,
+        class: File}
+      - {basename: uniprot-s-pyogenes-sf370-plus-potato-and-human-spike-ins.fasta,
+        class: File}
+      - {basename: uniprot-s-pyogenes-sf370-plus-potato-and-human-spike-ins.fasta.phr,
+        class: File}
+      - {basename: uniprot-s-pyogenes-sf370-plus-potato-and-human-spike-ins.fasta.pin,
+        class: File}
+      - {basename: uniprot-s-pyogenes-sf370-plus-potato-and-human-spike-ins.fasta.psq,
+        class: File}
 redVersion: '7'