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‎CITATION.md‎

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@@ -41,8 +41,8 @@ Additionally, if you use Devito for distributed runs, you may want to cite the f
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@misc{bisbas2024automatedmpixcodegeneration,
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title={Automated MPI-X code generation for scalable finite-difference solvers},
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author={Bisbas, George and Nelson, Rhodri and Louboutin, Mathias and Luporini, Fabio and Kelly, Paul H.J. and Gorman, Gerard},
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booktitle={2025 IEEE International Parallel and Distributed Processing Symposium (IPDPS)},
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title={Automated MPI-X Code Generation for Scalable Finite-Difference Solvers},
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booktitle={2025 IEEE International Parallel and Distributed Processing Symposium (IPDPS)},
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title={Automated MPI-X Code Generation for Scalable Finite-Difference Solvers},
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year={2025},
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volume={},
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number={},

‎FAQ.md‎

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‎README.md‎

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@@ -95,7 +95,7 @@ provided with Devito or create your own notebooks.
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instructions and other options. If you encounter a problem during installation, please
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see the
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[installation issues](https://github.com/devitocodes/devito/wiki/Installation-Issues) we
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have seen in the past.
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have seen in the past.
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## Resources
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[conversation](https://join.slack.com/t/devitocodes/shared_invite/zt-2hgp6891e-jQDcepOWPQwxL5JJegYKSA).
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## Interactive jupyter notebooks
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The tutorial jupyter notebook are available interactively at the public [binder](https://mybinder.org/v2/gh/devitocodes/devito/main) jupyterhub.
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The tutorial jupyter notebook are available interactively at the public [binder](https://mybinder.org/v2/gh/devitocodes/devito/main) jupyterhub.

‎docker/Dockerfile.amd‎

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@@ -84,8 +84,8 @@ RUN rm -rf /tmp/ucx && rm -rf /tmp/ompi
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# Adding OpenMPI and UCX to Environment
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ENV PATH=$OMPI_HOME/bin:$UCX_HOME/bin:$PATH \
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LD_LIBRARY_PATH=$OMPI_HOME/lib:$UCX_HOME/lib:$LD_LIBRARY_PATH \
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C_INCLUDE_PATH=$OMPI_HOME/include:$UCX_HOME/include:$C_INCLUDE_PATH \
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CPLUS_INCLUDE_PATH=$OMPI_HOME/include:$UCX_HOME/include:$CPLUS_INCLUDE_PATH \
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C_INCLUDE_PATH=$OMPI_HOME/include:$UCX_HOME/include:$C_INCLUDE_PATH \
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CPLUS_INCLUDE_PATH=$OMPI_HOME/include:$UCX_HOME/include:$CPLUS_INCLUDE_PATH \
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CPATH=$OMPI_HOME/include:$UCX_HOME/include:$CPATH \
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INCLUDE=$OMPI_HOME/include:$UCX_HOME/include:$INCLUDE \
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PKG_CONFIG_PATH=$OMPI_HOME/lib/pkgconfig:$UCX_HOME/lib/pkgconfig:$PKG_CONFIG_PATH

‎docker/Dockerfile.cpu‎

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# architectures using GCC compilers and OpenMPI.
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##############################################################
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# Base image
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# Base image
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FROM ubuntu:22.04 AS base
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ARG gcc=""

‎docker/Dockerfile.nvidia‎

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@@ -121,8 +121,8 @@ RUN echo "$HPCSDK_HOME/cuda/lib" >> /etc/ld.so.conf.d/nvidia.conf && \
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echo "$HPCSDK_HOME/compilers/lib" >> /etc/ld.so.conf.d/nvidia.conf && \
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echo "$HPCSDK_HOME/comm_libs/mpi/lib" >> /etc/ld.so.conf.d/nvidia.conf && \
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echo "$HPCSDK_CUPTI/lib64" >> /etc/ld.so.conf.d/nvidia.conf && \
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echo "$HPCSDK_HOME/math_libs/lib64" >> /etc/ld.so.conf.d/nvidia.conf
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echo "$HPCSDK_HOME/math_libs/lib64" >> /etc/ld.so.conf.d/nvidia.conf
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# Compiler, CUDA, and Library paths
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# CUDA_HOME has been deprecated but keep for now because of other dependencies (@mloubout).
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ENV CUDA_HOME=$HPCSDK_HOME/cuda

‎docker/README.md‎

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# [Devito] Docker image library
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In order to facilitate the dissemination, usage, and development of Devito, we provide a series of Docker images. These images support numerous architectures and compilers and are tagged accordingly. You can find all the available images at [DevitoHub](https://hub.docker.com/r/devitocodes/). The following describes the available images and the workflow to build it yourself.
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In order to facilitate the dissemination, usage, and development of Devito, we provide a series of Docker images. These images support numerous architectures and compilers and are tagged accordingly. You can find all the available images at [DevitoHub](https://hub.docker.com/r/devitocodes/). The following describes the available images and the workflow to build it yourself.
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## [Devito] images
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To run this image locally, you will first need to install `docker`. Then, the following commands will get you started:
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```bash
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# Pull image and start a bash shell
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# Pull image and start a bash shell
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docker run --rm -it -p 8888:8888 -p 8787:8787 -p 8786:8786 devitocodes/devito:gcc-latest /bin/bash
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docker run --rm -it -p 8888:8888 -p 8787:8787 -p 8786:8786 --device=/dev/infiniband/uverbs0 --device=/dev/infiniband/rdma_cm devitocodes/devito:gcc-latest /bin/bash
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‎docker/Singularity.nvidia.def‎

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%help
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##############################################################
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# This Dockerfile contains the additional NVIDIA compilers,
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# libraries, and plugins to enable OpenACC and NVIDIA GPU
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# This Dockerfile contains the additional NVIDIA compilers,
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# libraries, and plugins to enable OpenACC and NVIDIA GPU
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# acceleration of Devito codes.
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#
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# BUILD:
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# BUILD:
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# singularity build --fakeroot devito.nvidia.sif docker/Singularity.nvidia.def
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#
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# RUN:
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# RUN:
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# singularity run --nv --writable-tmpfs devito.nvidia.sif
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##############################################################
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export DEVITO_PLATFORM=nvidiaX
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# Options: [unset, 1] For PGI openacc; Should only be set after a first execution of the benchmark
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# export DEVITO_JIT_BACKDOOR=1
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# export DEVITO_JIT_BACKDOOR=1
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# Enable logging, Options: [unset, PERF, DEBUG]
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export DEVITO_LOGGING=DEBUG
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#export PGI_ACC_TIME=1
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#export PGI_ACC_TIME=1
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# Set the home directory to our app user's home.
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export HOME=/app
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export DEBIAN_FRONTEND=noninteractive
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# nodesource: nvdashboard requires nodejs>=10
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# nodesource: nvdashboard requires nodejs>=10
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echo 'deb [trusted=yes] https://developer.download.nvidia.com/hpc-sdk/ubuntu/amd64 /' > /etc/apt/sources.list.d/nvhpc.list && \
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apt-get update -y && \
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apt-get install -y -q \
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export HPCSDK_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/2022
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export HPCSDK_CUPTI=/opt/nvidia/hpc_sdk/Linux_x86_64/2022/cuda/11.6/extras/CUPTI
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# Compiler, CUDA, and Library paths
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export CUDA_HOME=$HPCSDK_HOME/cuda
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export NVHPC_CUDA_HOME=$HPCSDK_HOME/cuda
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/venv/bin/pip install --no-cache-dir -r /app/requirements-optional.txt && \
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/venv/bin/pip install --no-cache-dir -r /app/requirements-nvidia.txt && \
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rm -rf ~/.cache/pip
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# MPI ROOT USER DEFAULTS
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export CPATH=$HPCSDK_HOME/comm_libs/mpi/include:${CPATH}
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export CFLAGS=-noswitcherror
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# Do Nothing
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#MPI 4
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#rm -f $HPCSDK_HOME/comm_libs/mpi && \
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#ln -sf $HPCSDK_HOME/comm_libs/openmpi4/openmpi-4.0.5 $HPCSDK_HOME/comm_libs/mpi ;
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#ln -sf $HPCSDK_HOME/comm_libs/openmpi4/openmpi-4.0.5 $HPCSDK_HOME/comm_libs/mpi ;
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#HPCX
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rm -f $HPCSDK_HOME/comm_libs/mpi && \
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ln -sf $HPCSDK_HOME/comm_libs/hpcx/latest/ompi $HPCSDK_HOME/comm_libs/mpi ;
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ln -sf $HPCSDK_HOME/comm_libs/hpcx/latest/ompi $HPCSDK_HOME/comm_libs/mpi ;
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chmod -R 755 /app
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/venv/bin/jupyter serverextension enable dask_labextension
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/venv/bin/jupyter serverextension enable dask_labextension
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# /venv/bin/jupyter lab workspaces import /app/nvdashboard.json
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%runscript

‎docker/run-jupyterlab.sh‎

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#!/usr/bin/env bash
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/venv/bin/jupyter-lab --ip=0.0.0.0 --port=8888 --allow-root --NotebookApp.token=''
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/venv/bin/jupyter-lab --ip=0.0.0.0 --port=8888 --allow-root --NotebookApp.token=''

‎examples/README.md‎

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equations.
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* `seismic/self-adjoint`: Self-adjoint energy conserving pseudo-acoustic
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operators, including notebooks for implementation of the nonlinear forward,
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the forward and adjoint linearized Jacobian, and tests proving accuracy and
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the forward and adjoint linearized Jacobian, and tests proving accuracy and
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correctness.
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Further:

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