refactor: standardize all command references to plugin namespace format

Rename all slash command references from short format (/m0-init, /m-status,
/parallel) to plugin-namespaced format (/manifold:m0-init, /manifold:m-status,
/manifold:parallel) across the entire codebase.

This ensures consistent user experience regardless of installation method
(Claude Code plugin vs standalone installer). The manifold: prefix is
automatically added by the plugin namespace system.

Updated 157 files across:
- Canonical command files (install/commands/*.md)
- Build template (install/lib/build-commands.ts)
- Hooks (manifold-context.ts, auto-suggester.ts)
- CLI source and tests (cli/)
- Generated agent files (Gemini TOML, Codex SKILL.md)
- Plugin files (plugin/)
- Documentation (docs/, CLAUDE.md, README.md, AGENTS.md)
- Templates (install/templates/)
- Examples (examples/)
- Internal manifolds (.manifold/)

Native CLI commands (manifold status, manifold validate) unchanged.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

Author: dhanesh

.manifold/framework-consolidation.anchor.yaml

@@ -21,7 +21,7 @@ required_truths:
 
   - id: RT3
     statement: "YAML schema uses 'user_experience' not 'ux'"
-    gap: "install/commands/m0-init.md uses 'ux' in schema"
+    gap: "install/commands/manifold:m0-init.md uses 'ux' in schema"
     action: "Update m0-init.md schema to use 'user_experience'"
     satisfies: [T1, T3]
 

.manifold/manifold-cli.anchor.yaml

@@ -26,7 +26,7 @@ required_truths:
   - id: RT-2
     statement: "Command output must match AI equivalents exactly"
     requires:
-      - "Same formatting logic as /m-status"
+      - "Same formatting logic as /manifold:m-status"
       - "Same convergence calculation algorithm"
       - "Same coverage percentage formulas"
     maps_to_constraints: [B2]
@@ -220,7 +220,7 @@ validation_gates:
     - "Schema v1 and v2 both detected"
     - "Parse time < 20ms for graph-d-validation.yaml"
   phase_2:
-    - "manifold status output matches /m-status format"
+    - "manifold status output matches /manifold:m-status format"
     - "Exit code 0 for valid manifolds"
     - "Exit code 2 for schema violations"
   phase_3:

.manifold/manifold-cli.json

@@ -411,7 +411,7 @@
           "U1"
         ],
         "status": "generated",
-        "description": "Status command matching /m-status output"
+        "description": "Status command matching /manifold:m-status output"
       },
       {
         "path": "cli/commands/validate.ts",

.manifold/manifold-cli.md

@@ -91,9 +91,9 @@ YAML output must round-trip without data loss
 
 ### User Experience
 
-#### U1: Command structure mirrors /m* commands (manifold status ≈ /m-status)
+#### U1: Command structure mirrors /m* commands (manifold status ≈ /manifold:m-status)
 
-Command structure mirrors /m* commands (manifold status ≈ /m-status)
+Command structure mirrors /m* commands (manifold status ≈ /manifold:m-status)
 
 > **Rationale:** Familiar mental model for existing users
 
@@ -221,7 +221,7 @@ YAML parsing must be fast and safe
 
 Command output must match AI equivalents exactly
 
-**Evidence:** Status output format matches /m-status, tested against existing manifolds
+**Evidence:** Status output format matches /manifold:m-status, tested against existing manifolds
 
 ### RT-3: Exit codes must enable CI/CD automation
 

.manifold/manifold-cli.verify.yaml

@@ -1,6 +1,6 @@
 # Verification Report: manifold-cli
 # Generated: 2026-01-15
-# Command: /m5-verify manifold-cli --artifacts
+# Command: /manifold:m5-verify manifold-cli --artifacts
 # Iteration: 5
 
 verification:
@@ -36,7 +36,7 @@ verification:
         exists: true
         satisfies: [RT-2, U1]
         type: command
-        description: "Status command matching /m-status output"
+        description: "Status command matching /manifold:m-status output"
 
       - path: "cli/commands/validate.ts"
         exists: true
@@ -100,7 +100,7 @@ verification:
       description: "Command output must match AI equivalents exactly"
       status: SATISFIED
       evidence:
-        - "cli/commands/status.ts: Output format mirrors /m-status"
+        - "cli/commands/status.ts: Output format mirrors /manifold:m-status"
         - "Verified against manifold-v2, framework-consolidation, manifold-cli"
         - "Iteration history table matches AI output"
 
@@ -289,7 +289,7 @@ summary:
     - "39 tests passing"
     - "68ms response time (32% under 100ms target)"
     - "6/6 required truths satisfied"
-    - "Output matches /m-status exactly"
+    - "Output matches /manifold:m-status exactly"
     - "Distribution complete: install.sh + GitHub Action"
 
   gaps: []

.manifold/manifold-v2.anchor.yaml

@@ -40,7 +40,7 @@ required_truths:
     requires:
       - "Keyword extraction from constraint statements"
       - "Mapping keywords to other constraint IDs"
-      - "Hidden dependency surfacing in /m2-tension"
+      - "Hidden dependency surfacing in /manifold:m2-tension"
     current_gap: "TN5 in graph-d (T3 blocks B4) was manually discovered"
     maps_to_constraint: [T4, B2]
     status: NOT_SATISFIED
@@ -72,10 +72,10 @@ required_truths:
   - id: RT-6
     statement: "New commands MUST follow /m* pattern"
     requires:
-      - "/m6-integrate command"
+      - "/manifold:m6-integrate command"
       - "Optional flags for existing commands"
       - "Install script updated"
-    current_gap: "No /m6-integrate exists; install script only has m0-m5"
+    current_gap: "No /manifold:m6-integrate exists; install script only has m0-m5"
     maps_to_constraint: [U2, T2]
     status: NOT_SATISFIED
     priority: 2
@@ -118,8 +118,8 @@ options:
     description: "Three phases: Schema evolution → Iteration+Dependencies → Integration+Actions"
     phases:
       - phase_a: "Schema v2 with iteration tracking + version field"
-      - phase_b: "Dependency detection in /m2-tension + /m-status enhancements"
-      - phase_c: "/m6-integrate command + gap-to-action automation"
+      - phase_b: "Dependency detection in /manifold:m2-tension + /manifold:m-status enhancements"
+      - phase_c: "/manifold:m6-integrate command + gap-to-action automation"
     satisfies: [RT-1, RT-2, RT-3, RT-4, RT-5, RT-6]
     trade_offs:
       - "Incremental value delivery"
@@ -150,77 +150,77 @@ recommendation:
       success_criteria:
         - "Existing manifolds parse without error"
         - "New manifolds track iteration state"
-        - "/m-status shows iteration history"
+        - "/manifold:m-status shows iteration history"
       files:
-        - "install/commands/m0-init.md (schema template)"
-        - "install/commands/m-status.md (iteration display)"
+        - "install/commands/manifold:m0-init.md (schema template)"
+        - "install/commands/manifold:m-status.md (iteration display)"
         - "install/manifold/SKILL.md (documentation)"
 
     - phase: B
       name: "Intelligence Layer"
       truths: [RT-3, U1_enhanced]
       deliverables:
-        - "Dependency detection in /m2-tension"
+        - "Dependency detection in /manifold:m2-tension"
         - "Auto-surfacing hidden dependencies"
-        - "Parallel track identification in /m3-anchor"
-        - "/m-status with diff and convergence"
+        - "Parallel track identification in /manifold:m3-anchor"
+        - "/manifold:m-status with diff and convergence"
       success_criteria:
         - "TN5-type dependencies auto-detected"
         - "Parallel opportunities surfaced"
         - "Convergence status calculated"
       files:
-        - "install/commands/m2-tension.md (dependency detection)"
-        - "install/commands/m3-anchor.md (parallel tracks)"
-        - "install/commands/m-status.md (convergence)"
+        - "install/commands/manifold:m2-tension.md (dependency detection)"
+        - "install/commands/manifold:m3-anchor.md (parallel tracks)"
+        - "install/commands/manifold:m-status.md (convergence)"
 
     - phase: C
       name: "Automation Layer"
       truths: [RT-2, RT-4, RT-6]
       deliverables:
-        - "/m6-integrate command"
+        - "/manifold:m6-integrate command"
         - "Integration hints in generated artifacts"
         - "Gap-to-action automation"
         - "Install script update"
       success_criteria:
         - "Generated artifacts include wiring hints"
         - "Gaps produce executable actions"
-        - "/m6-integrate wires artifacts"
+        - "/manifold:m6-integrate wires artifacts"
       files:
-        - "install/commands/m6-integrate.md (new command)"
-        - "install/commands/m4-generate.md (integration hints)"
-        - "install/commands/m5-verify.md (gap-to-action)"
+        - "install/commands/manifold:m6-integrate.md (new command)"
+        - "install/commands/manifold:m4-generate.md (integration hints)"
+        - "install/commands/manifold:m5-verify.md (gap-to-action)"
         - "install/install.sh (new command)"
 
 # Validation gates per phase
 validation_gates:
   phase_a:
     - "Existing manifolds (graph-d, framework-consolidation) still parse"
     - "New manifold with iterations[] section works"
-    - "/m-status displays iteration history"
+    - "/manifold:m-status displays iteration history"
   phase_b:
     - "All Phase A gates"
-    - "/m2-tension auto-detects at least 1 hidden dependency"
-    - "/m-status shows convergence status"
+    - "/manifold:m2-tension auto-detects at least 1 hidden dependency"
+    - "/manifold:m-status shows convergence status"
   phase_c:
     - "All Phase B gates"
-    - "/m6-integrate produces wiring checklist"
+    - "/manifold:m6-integrate produces wiring checklist"
     - "Gap actions are copy-paste executable"
 
 # Critical path
 critical_path:
   step_1:
     action: "Add schema_version field and iterations[] section"
     unblocks: [RT-2, RT-3, RT-4]
-    files: ["install/commands/m0-init.md"]
+    files: ["install/commands/manifold:m0-init.md"]
   step_2:
-    action: "Implement dependency detection in /m2-tension"
+    action: "Implement dependency detection in /manifold:m2-tension"
     requires: [step_1]
-    files: ["install/commands/m2-tension.md"]
+    files: ["install/commands/manifold:m2-tension.md"]
   step_3:
-    action: "Create /m6-integrate command"
+    action: "Create /manifold:m6-integrate command"
     requires: [step_1, step_2]
-    files: ["install/commands/m6-integrate.md", "install/install.sh"]
+    files: ["install/commands/manifold:m6-integrate.md", "install/install.sh"]
   step_4:
-    action: "Add gap-to-action automation in /m5-verify"
+    action: "Add gap-to-action automation in /manifold:m5-verify"
     requires: [step_1]
-    files: ["install/commands/m5-verify.md"]
+    files: ["install/commands/manifold:m5-verify.md"]

.manifold/manifold-v2.json

@@ -166,7 +166,7 @@
         "phase_b": "Intelligence Layer - dependency detection + convergence"
       },
       {
-        "phase_c": "Automation Layer - /m6-integrate + gap-to-action"
+        "phase_c": "Automation Layer - /manifold:m6-integrate + gap-to-action"
       }
     ]
   },
@@ -227,7 +227,7 @@
     "iteration": 1,
     "artifacts": [
       {
-        "path": "install/commands/m0-init.md",
+        "path": "install/commands/manifold:m0-init.md",
         "type": "documentation",
         "satisfies": [
           "RT-1",
@@ -238,7 +238,7 @@
         "description": "Updated with schema_version and iterations[] section"
       },
       {
-        "path": "install/commands/m-status.md",
+        "path": "install/commands/manifold:m-status.md",
         "type": "documentation",
         "satisfies": [
           "RT-1",
@@ -249,7 +249,7 @@
         "description": "Added --history flag and convergence display"
       },
       {
-        "path": "install/commands/m2-tension.md",
+        "path": "install/commands/manifold:m2-tension.md",
         "type": "documentation",
         "satisfies": [
           "RT-3"
@@ -259,7 +259,7 @@
         "description": "Added --auto-deps for dependency detection"
       },
       {
-        "path": "install/commands/m6-integrate.md",
+        "path": "install/commands/manifold:m6-integrate.md",
         "type": "documentation",
         "satisfies": [
           "RT-2",
@@ -270,7 +270,7 @@
         "description": "New command for artifact integration"
       },
       {
-        "path": "install/commands/m5-verify.md",
+        "path": "install/commands/manifold:m5-verify.md",
         "type": "documentation",
         "satisfies": [
           "RT-4"
@@ -298,7 +298,7 @@
         ],
         "status": "generated",
         "phase": "C",
-        "description": "Updated with v2 features and /m6-integrate"
+        "description": "Updated with v2 features and /manifold:m6-integrate"
       },
       {
         "path": "examples/manifold-v2-example.yaml",

.manifold/manifold-v2.md

@@ -66,9 +66,9 @@ Integration phase should auto-detect wiring points
 
 ### User Experience
 
-#### U1: /m-status should show iteration history and convergence
+#### U1: /manifold:m-status should show iteration history and convergence
 
-/m-status should show iteration history and convergence
+/manifold:m-status should show iteration history and convergence
 
 > **Rationale:** Visibility into multi-pass progress
 
@@ -134,9 +134,9 @@ Copy-paste executable actions may require shell syntax that clutters YAML
 
 > **Resolution:** Actions stored in separate 'actions' section with YAML multiline strings; human-readable summary in main flow
 
-### TN4: /m6-integrate needs iteration context to know what was generated when
+### TN4: /manifold:m6-integrate needs iteration context to know what was generated when
 
-/m6-integrate needs iteration context to know what was generated when
+/manifold:m6-integrate needs iteration context to know what was generated when
 
 > **Resolution:** Iteration tracking (U1) must be implemented BEFORE integration phase (T5)
 
@@ -184,4 +184,4 @@ Existing manifolds MUST remain valid
 
 New commands MUST follow /m* pattern
 
-**Evidence:** /m6-integrate follows pattern
+**Evidence:** /manifold:m6-integrate follows pattern