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SEAB-7772 Bump nextflow-parsing to Java 21 and align with dockstore versions #341

	name: "CodeQL"

	on:
	push:
	branches: [ "develop", "master", "hotfix/", "release/", "feature/**" ]
	pull_request:
	branches: [ "develop", "master", "hotfix/", "release/" ]

	jobs:
	analyze:
	name: Analyze
	runs-on: ubuntu-26.04
	permissions:
	actions: read
	contents: read
	security-events: write

	steps:
	- name: Checkout
	uses: actions/checkout@v6

	- name: Initialize CodeQL
	uses: github/codeql-action/init@v4
	with:
	languages: javascript
	queries: +security-and-quality

	- name: Autobuild
	uses: github/codeql-action/autobuild@v4

	- name: Perform CodeQL Analysis
	uses: github/codeql-action/analyze@v4
	with:
	category: javascript

	- name: Initialize CodeQL
	uses: github/codeql-action/init@v4
	with:
	languages: java
	queries: +security-and-quality

	- uses: actions/cache@v5
	with:
	path: ~/.m2/repository
	key: ${{ runner.os }}-maven-${{ hashFiles('./wdl-parsing/WDLParsingFunction/pom.xml') }}
	restore-keys: \|
	${{ runner.os }}-maven-

	- name: Autobuild
	uses: github/codeql-action/autobuild@v4
	with:
	working-directory: ./wdl-parsing/WDLParsingFunction

	- name: Perform CodeQL Analysis
	uses: github/codeql-action/analyze@v4
	with:
	category: java
	working-directory: ./wdl-parsing/WDLParsingFunction